HHsearch alignment for GI: 254780536 and conserved domain: TIGR02816
>TIGR02816 pfaB_fam PfaB family protein; InterPro: IPR014181 This entry represents a group of proteins based on a Pfam B protein family. The protein PfaB family is part of a four-gene locus, which is similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cut off set for this HMM allows detection of homologues encoded near homologues to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis..
Probab=99.91 E-value=9.1e-24 Score=163.73 Aligned_cols=287 Identities=15% Similarity=0.231 Sum_probs=191.4
Q ss_pred EEEECCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHCCC------CHHHHHCHHHHHHHH--HHHHHHHHH
Q ss_conf 999808733373115899998599999999999988398978985389------867830467650345--666654789
Q gi|254780536|r 3 TVLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNG------SQEELTATCNAQPAL--TAVSMAFIR 74 (314)
Q Consensus 3 ~~f~FpGQGsq~~gM~~~L~~~~p~~r~~~~~~~~~l~~~l~~~~~~~------~~~~l~~~~~~Qp~i--~~~~~a~~~ 74 (314)
T Consensus 183 ~~FVYPGVGTVY~~Ml~~lHQYFPALyA~LER-----EG~LK~MLQAE~~Y~~~Pkh-aA~M~LG~LAIAGVGSSYLLTQ 256 (538)
T TIGR02816 183 LAFVYPGVGTVYADMLRDLHQYFPALYAKLER-----EGDLKEMLQAEDIYGLDPKH-AAEMSLGDLAIAGVGSSYLLTQ 256 (538)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHCCCCCHH-HHHCCHHHHHHHHCCHHHHHHH
T ss_conf 03771885430167887676532688875236-----76568885176530677204-5421322355541026889998
Q ss_pred HHHHC-CCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHH--------------H--HHHHHHHHHHHHHCCCCCC--CC-
Q ss_conf 99971-887643544246654420122253178650233--------------3--3345688653100111122--22-
Q gi|254780536|r 75 VMEKN-GLCVKRDISYVAGHSLGEYTALCAAKAFSLSDT--------------I--RLVRARGKSMQEAVPPGLG--SM- 134 (314)
Q Consensus 75 ~l~~~-gi~~~~~p~~v~GhSlGE~aAl~~aG~ls~eda--------------~--~lv~~R~~~m~~~~~~~~g--~M- 134 (314)
T Consensus 257 LL~~EF~~----KP~FALGYS~GEASMWASLGVW~NPHALI~~TQT~P~FT~AISGKLTAV-----R~AWQL~DtA~EI~ 327 (538)
T TIGR02816 257 LLTDEFAV----KPDFALGYSKGEASMWASLGVWKNPHALIEKTQTDPLFTSAISGKLTAV-----REAWQLDDTAEEIT 327 (538)
T ss_pred HHHHHHCC----CCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHH-----HHHHCCCCCHHHHC
T ss_conf 75554146----8761235552125777541433473466530168852021110034666-----54403222142302
Q ss_pred C--CCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC-HHCCHHH
Q ss_conf 2--123503553112234421135420012232221353033112899988888865310035555432342-0102037
Q gi|254780536|r 135 V--AIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVKCAADTCLNKGAKRAVFLPVSAPFHS-SLMTPVS 211 (314)
Q Consensus 135 ~--aV~~~~~~~~~~~~~~~~~~~~~~ia~~Ns~~q~visG~~~~l~~~~~~~~~~~~~~~~~L~v~~afHs-~lm~~~~ 211 (314)
T Consensus 328 WNSFVVR~E~A~IEALL~~y---P~AYLAIIQG-DTCV~AGCE~~C~ALL~~LGKRGIA-ANR---VTAMHT~PAl~~H~ 399 (538)
T TIGR02816 328 WNSFVVRSEAATIEALLKDY---PRAYLAIIQG-DTCVLAGCEITCKALLKKLGKRGIA-ANR---VTAMHTTPALSEHS 399 (538)
T ss_pred CCCEEEECCCCCHHHHHHHC---CHHHHHHEEC-CEEEEECCCHHHHHHHHHHCCCCCC-CCC---CHHHCCCHHHHHHH
T ss_conf 26417862642055532211---0342001006-7226527647789999970766421-102---01212760356323
Q ss_pred HHHHHHHHHHHHC-CCCCCCCCCCCCCCC-------CCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCHHH
Q ss_conf 8888742223202-877654204578710-------01002332222204485019999999997799899993898799
Q gi|254780536|r 212 KVMKWMLDSVTKQ-DPVVPILPNFCASPV-------SSIDEISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVL 283 (314)
Q Consensus 212 ~~~~~~l~~i~~~-~p~ipi~S~~~g~~~-------~~~~~~~~~l~~ql~~pV~f~~~i~~l~~~g~~~fiEiGP~~~L 283 (314)
T Consensus 400 ~V~~FY~QPL~~ELP~~I~FISAA~L~~~~~~~~~~~~SQ~~A~SIADTFC~TLDFTAL~~~A~~QGA~LFVEIGADRQ~ 479 (538)
T TIGR02816 400 NVTDFYLQPLKDELPSDIKFISAADLLAKNTVVEVALDSQVVANSIADTFCTTLDFTALVRTAREQGAKLFVEIGADRQT 479 (538)
T ss_pred HHHHHHCCCHHHHCCCCCCEECHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 57776315202326754310012014500023530100467887666553003458999999974487588886066543
Q ss_pred HHHHHHHCCCCC----------EEEC--CCHHHHHHHHHHH
Q ss_conf 999998738981----------5523--9989999999874
Q gi|254780536|r 284 TGLAKRIDKSLS----------AVSI--SKVEDIDLALRSI 312 (314)
Q Consensus 284 t~l~~~~~~~~~----------~~~~--~~~~~~~~~l~~~ 312 (314)
T Consensus 480 ~TLIDKI~~~D~~~~~~hqPCCTV~~NAKG~~DI~~~~K~~ 520 (538)
T TIGR02816 480 STLIDKIVKTDNVSSVSHQPCCTVAANAKGSEDIVSLLKAL 520 (538)
T ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 30212100247843001576445445677850089999999