RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780536|ref|YP_003064949.1| acyl-carrier-protein S-malonyltransferase [Candidatus Liberibacter asiaticus str. psy62] (314 letters) >gnl|CDD|30679 COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]. Length = 310 Score = 334 bits (857), Expect = 3e-92 Identities = 153/309 (49%), Positives = 201/309 (65%), Gaps = 2/309 (0%) Query: 1 MSTVLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCN 60 T FPGQGSQ +GMG+DLY++ PEA+ F+E D L +L L++ G +EEL T N Sbjct: 2 SKTAFVFPGQGSQSLGMGKDLYENSPEAKETFDEADEALGFDLWALVFEGPEEELNLTQN 61 Query: 61 AQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARG 120 QPAL VS+A RV+ + GL VK D +VAGHSLGEY+AL AA S D ++LVR RG Sbjct: 62 TQPALLLVSLAAYRVLAEQGLGVKPD--FVAGHSLGEYSALAAAGVLSFEDALKLVRKRG 119 Query: 121 KSMQEAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVKC 180 K MQEAVP G G M A++GLDD V+ C +A++ + EIAN N GQ+VISG ++A++ Sbjct: 120 KLMQEAVPRGEGGMAAVLGLDDEQVEKACEEAAQGTVVEIANYNSPGQIVISGTKEALEK 179 Query: 181 AADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASPVS 240 AA+ GAKRA+ LPVS PFHS LM P + + L+ V DP+VP++ N A PV Sbjct: 180 AAEILKEAGAKRAIPLPVSGPFHSPLMKPAADELAEALEKVRFSDPLVPVISNVDAKPVL 239 Query: 241 SIDEISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSLSAVSIS 300 +EI LL +Q+T VRW ET++ GV E+G GKVLTGLAKRI K L ++ Sbjct: 240 DGEEIRELLAKQLTSPVRWTETVETLKADGVTRFVEIGPGKVLTGLAKRILKGLGVRAVG 299 Query: 301 KVEDIDLAL 309 +ED++ AL Sbjct: 300 SLEDLNAAL 308 >gnl|CDD|38137 KOG2926, KOG2926, KOG2926, Malonyl-CoA:ACP transacylase [Lipid transport and metabolism]. Length = 386 Score = 194 bits (493), Expect = 4e-50 Identities = 102/302 (33%), Positives = 156/302 (51%), Gaps = 10/302 (3%) Query: 3 TVLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCNAQ 62 +V+ FPGQG+Q +GMG+ L P AR +F E + L +L + NG +E+L T AQ Sbjct: 64 SVILFPGQGAQSVGMGQYLLQ-NPAARRLFAEASNVLGYDLLKICVNGPKEKLDRTVIAQ 122 Query: 63 PALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARGKS 122 PA+ S+A + + G + ++ AG SLGEY AL A A S S ++LV+AR ++ Sbjct: 123 PAIDVSSLAALEQLRLLGPSIIENLVVTAGFSLGEYAALVFAGALSFSSALKLVKARAEA 182 Query: 123 MQEAVPPGLGSMVAIIGLDDCVVDSICAQASRVG------ICEIANDNGGGQVVISGLQD 176 M EA MV I+GL V CA A+++ +CE+AN GQ V+SGL Sbjct: 183 MSEASELVASGMVMILGLPTSKVQKACASANQLSASQEYPVCEVANYLSPGQRVVSGLVK 242 Query: 177 AVKCAADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCA 236 A++ + + +R L VS FH+ LM P + + L +V ++PV+P++ N Sbjct: 243 ALESLEENAKSFKIRRMKRLAVSGAFHTRLMEPAVEPLTKALKAVEIKNPVIPVISNVDG 302 Query: 237 SPVSSIDEISRLLVEQVTGRVRWRETIQWF---ANHGVKSVYEVGSGKVLTGLAKRIDKS 293 P I + L +Q+ V+W +T++ G YEVG G+VL + KR + Sbjct: 303 KPYRDPGHILKQLAKQIVRPVQWEQTLKTIYSKQGVGFPRSYEVGPGRVLVAILKRNNPQ 362 Query: 294 LS 295 Sbjct: 363 AD 364 >gnl|CDD|33130 COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 1061 Score = 132 bits (334), Expect = 1e-31 Identities = 95/312 (30%), Positives = 138/312 (44%), Gaps = 13/312 (4%) Query: 3 TVLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQN----LSDLMWNGSQEELTAT 58 TV FPGQGSQ GMGR+LY P F+ ++ L++ L ++++ L + Sbjct: 527 TVFVFPGQGSQWAGMGRELYALEPVFASAFDALEALLHRLLGFSLPEVIFAPDYPFLESI 586 Query: 59 CNAQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRA 118 AQPAL AVS+A + G V V GHSLGE A AA SL D +R+V Sbjct: 587 DFAQPALFAVSVALAALWRSWG--VIPG--AVIGHSLGELAAAVAAGVLSLEDALRVVAT 642 Query: 119 RGKSMQEAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAV 178 RG+ MQ+ G G+M+A+ L R + +A N QVVI+G +A+ Sbjct: 643 RGRLMQQL--AGEGAMLAVE-LSLLAEVQELLALGRPQVP-LAAVNSPQQVVIAGDPEAI 698 Query: 179 KCAADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASP 238 +G RA L VS FHS LM P+ L + + P +P++ N Sbjct: 699 AALIARLQAQG-VRARRLAVSHAFHSPLMDPILDEFAAALADLAPRPPQIPLISNVTGDL 757 Query: 239 VSSIDEISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSLSAVS 298 ++ V+ + VR+ + I G ++ EVG G VLT K+ + Sbjct: 758 AGEPGGDAQYWVQHLRQPVRFADAIAAALADGARTFIEVGPGPVLTESIKQTLRDAILSI 817 Query: 299 ISKVEDIDLALR 310 + D L Sbjct: 818 ATLRRDAPELLS 829 >gnl|CDD|144338 pfam00698, Acyl_transf_1, Acyl transferase domain. Length = 319 Score = 105 bits (263), Expect = 2e-23 Identities = 66/236 (27%), Positives = 96/236 (40%), Gaps = 25/236 (10%) Query: 4 VLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQ----NLSDLMWNGSQEELTATC 59 V F GQGSQ GMG DL + P D ++ D++ N + L Sbjct: 1 VFVFSGQGSQWAGMGMDLLKTSPVFAAAIARCDEAFKPQYGFSVLDVLRNNPEGLLERVD 60 Query: 60 NAQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRAR 119 QPAL A+ +A ++ G V V GHSLGE A A A SL + +V R Sbjct: 61 VVQPALFAMQIALAALLRSYG--VTPAA--VVGHSLGEIAAAVVAGALSLEEAALVVALR 116 Query: 120 GKSMQEAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAV- 178 + M++ P G M A +GL V+ + RV +A N VV++G Q+A+ Sbjct: 117 SRLMRQLAGP--GGMAA-VGLPAEEVEQLARWPDRV---VVAIVNSPRSVVVAGPQEALD 170 Query: 179 ----KCAADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPI 230 + A RA + V HS + + + L + + P VP Sbjct: 171 EFVERVEARG------VRARVIAVDYASHSPQVEAIGDALALALADIAPRTPRVPF 220 >gnl|CDD|36416 KOG1202, KOG1202, KOG1202, Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]. Length = 2376 Score = 53.1 bits (127), Expect = 1e-07 Identities = 54/224 (24%), Positives = 89/224 (39%), Gaps = 21/224 (9%) Query: 7 FPGQGSQVIGMGRDLY--DSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCNAQPA 64 + G GSQ GM +DL + F ++ EV ++ D++ + N+ + Sbjct: 505 YSGMGSQWAGMAKDLMKLERFRDSIQRSAEVLKPFGLDVIDVLTRSDESTFDNILNSFVS 564 Query: 65 LTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARGKSMQ 124 +TA+ +A ++ G+ + GHSLGE A + T+ RG+S+ Sbjct: 565 ITAIQIALTDLLSCLGI----RPDGIVGHSLGELGCGYADGCLTQEQTVLAAYWRGQSIL 620 Query: 125 EAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVKCAADT 184 + P G+M A +GL S C V C + DN V ISG Q +V Sbjct: 621 DTHLPK-GAMAA-VGLSWEQCKSRCPPDV-VPACHNSKDN----VTISGPQASV----FA 669 Query: 185 CLNKGAKRAVFLPV----SAPFHSSLMTPVSKVMKWMLDSVTKQ 224 + + VF FHS M + ++ L+ V + Sbjct: 670 FVEQLRAEGVFAKEVRTGGYAFHSPYMEAAAPPLRQSLEKVIPE 713 >gnl|CDD|33017 COG3204, COG3204, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 316 Score = 29.9 bits (67), Expect = 1.0 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 3/89 (3%) Query: 7 FPGQGSQVIGMGRDLYDSFPEARLVFEEVDHT-LNQNLSDLMWNGSQEELTATCNAQPAL 65 F + + + R + E R + N+S L +N L A N A+ Sbjct: 51 FKAGQTNGLDLSRYIARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAI 110 Query: 66 TAVSMA--FIRVMEKNGLCVKRDISYVAG 92 ++ IR + G I Y+ G Sbjct: 111 VELTKEGDLIRTIPLTGFSDPETIEYIGG 139 >gnl|CDD|35813 KOG0593, KOG0593, KOG0593, Predicted protein kinase KKIAMRE [General function prediction only]. Length = 396 Score = 28.4 bits (63), Expect = 3.0 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 8/58 (13%) Query: 30 LVFEEVDHTLNQNLSDLMWNGSQEELTATCNAQPALTAVSMAFIRVMEKNGLCVKRDI 87 LVFE DHT+ L + NG EL Q I KN C+ RDI Sbjct: 78 LVFEYCDHTVLHEL-ERYPNGVPSELVKKYLYQLLKA------IHFCHKNN-CIHRDI 127 >gnl|CDD|132856 cd07217, Pat17_PNPLA8_PNPLA9_like4, Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum. Length = 344 Score = 28.2 bits (63), Expect = 3.3 Identities = 11/35 (31%), Positives = 16/35 (45%) Query: 89 YVAGHSLGEYTALCAAKAFSLSDTIRLVRARGKSM 123 +V G S G A C A S++D + G +M Sbjct: 44 FVGGTSTGSIIAACIALGMSVTDLLSFYTLNGVNM 78 >gnl|CDD|36462 KOG1248, KOG1248, KOG1248, Uncharacterized conserved protein [Function unknown]. Length = 1176 Score = 27.2 bits (60), Expect = 6.7 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 6/73 (8%) Query: 195 FLPVSAPFHSSLMT-PVSKVMKWMLDSVTKQDPVVPILPNFCASPV---SSIDEISRLLV 250 +P++ + + D++ D + +LP FC PV S +++ +L Sbjct: 467 IVPLAMSLQLKAKKLKEAGSQVSLYDTL--VDQLWSLLPGFCNYPVDLAESFTDLAPILG 524 Query: 251 EQVTGRVRWRETI 263 + R RETI Sbjct: 525 AALLKRPELRETI 537 >gnl|CDD|144380 pfam00756, Esterase, Putative esterase. This family contains Esterase D. However it is not clear if all members of the family have the same function. This family is related to the pfam00135 family. Length = 243 Score = 27.0 bits (60), Expect = 6.7 Identities = 7/15 (46%), Positives = 9/15 (60%) Query: 90 VAGHSLGEYTALCAA 104 +AG S+G AL A Sbjct: 115 LAGQSMGGLGALYLA 129 >gnl|CDD|37277 KOG2066, KOG2066, KOG2066, Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]. Length = 846 Score = 26.8 bits (59), Expect = 7.4 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Query: 257 VRWRET-IQWFANHGVKSVYEVGSGKVLT 284 ++WR I W + GVK VY+ + + LT Sbjct: 166 IKWRGNLIAWANDDGVK-VYDTPTRQRLT 193 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.133 0.389 Gapped Lambda K H 0.267 0.0661 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,572,013 Number of extensions: 178597 Number of successful extensions: 464 Number of sequences better than 10.0: 1 Number of HSP's gapped: 453 Number of HSP's successfully gapped: 14 Length of query: 314 Length of database: 6,263,737 Length adjustment: 94 Effective length of query: 220 Effective length of database: 4,232,491 Effective search space: 931148020 Effective search space used: 931148020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (25.9 bits)