RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780536|ref|YP_003064949.1| acyl-carrier-protein
S-malonyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (314 letters)



>gnl|CDD|30679 COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid
           metabolism].
          Length = 310

 Score =  334 bits (857), Expect = 3e-92
 Identities = 153/309 (49%), Positives = 201/309 (65%), Gaps = 2/309 (0%)

Query: 1   MSTVLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCN 60
             T   FPGQGSQ +GMG+DLY++ PEA+  F+E D  L  +L  L++ G +EEL  T N
Sbjct: 2   SKTAFVFPGQGSQSLGMGKDLYENSPEAKETFDEADEALGFDLWALVFEGPEEELNLTQN 61

Query: 61  AQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARG 120
            QPAL  VS+A  RV+ + GL VK D  +VAGHSLGEY+AL AA   S  D ++LVR RG
Sbjct: 62  TQPALLLVSLAAYRVLAEQGLGVKPD--FVAGHSLGEYSALAAAGVLSFEDALKLVRKRG 119

Query: 121 KSMQEAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVKC 180
           K MQEAVP G G M A++GLDD  V+  C +A++  + EIAN N  GQ+VISG ++A++ 
Sbjct: 120 KLMQEAVPRGEGGMAAVLGLDDEQVEKACEEAAQGTVVEIANYNSPGQIVISGTKEALEK 179

Query: 181 AADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASPVS 240
           AA+     GAKRA+ LPVS PFHS LM P +  +   L+ V   DP+VP++ N  A PV 
Sbjct: 180 AAEILKEAGAKRAIPLPVSGPFHSPLMKPAADELAEALEKVRFSDPLVPVISNVDAKPVL 239

Query: 241 SIDEISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSLSAVSIS 300
             +EI  LL +Q+T  VRW ET++     GV    E+G GKVLTGLAKRI K L   ++ 
Sbjct: 240 DGEEIRELLAKQLTSPVRWTETVETLKADGVTRFVEIGPGKVLTGLAKRILKGLGVRAVG 299

Query: 301 KVEDIDLAL 309
            +ED++ AL
Sbjct: 300 SLEDLNAAL 308


>gnl|CDD|38137 KOG2926, KOG2926, KOG2926, Malonyl-CoA:ACP transacylase [Lipid
           transport and metabolism].
          Length = 386

 Score =  194 bits (493), Expect = 4e-50
 Identities = 102/302 (33%), Positives = 156/302 (51%), Gaps = 10/302 (3%)

Query: 3   TVLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCNAQ 62
           +V+ FPGQG+Q +GMG+ L    P AR +F E  + L  +L  +  NG +E+L  T  AQ
Sbjct: 64  SVILFPGQGAQSVGMGQYLLQ-NPAARRLFAEASNVLGYDLLKICVNGPKEKLDRTVIAQ 122

Query: 63  PALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARGKS 122
           PA+   S+A +  +   G  +  ++   AG SLGEY AL  A A S S  ++LV+AR ++
Sbjct: 123 PAIDVSSLAALEQLRLLGPSIIENLVVTAGFSLGEYAALVFAGALSFSSALKLVKARAEA 182

Query: 123 MQEAVPPGLGSMVAIIGLDDCVVDSICAQASRVG------ICEIANDNGGGQVVISGLQD 176
           M EA       MV I+GL    V   CA A+++       +CE+AN    GQ V+SGL  
Sbjct: 183 MSEASELVASGMVMILGLPTSKVQKACASANQLSASQEYPVCEVANYLSPGQRVVSGLVK 242

Query: 177 AVKCAADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCA 236
           A++   +   +   +R   L VS  FH+ LM P  + +   L +V  ++PV+P++ N   
Sbjct: 243 ALESLEENAKSFKIRRMKRLAVSGAFHTRLMEPAVEPLTKALKAVEIKNPVIPVISNVDG 302

Query: 237 SPVSSIDEISRLLVEQVTGRVRWRETIQWF---ANHGVKSVYEVGSGKVLTGLAKRIDKS 293
            P      I + L +Q+   V+W +T++        G    YEVG G+VL  + KR +  
Sbjct: 303 KPYRDPGHILKQLAKQIVRPVQWEQTLKTIYSKQGVGFPRSYEVGPGRVLVAILKRNNPQ 362

Query: 294 LS 295
             
Sbjct: 363 AD 364


>gnl|CDD|33130 COG3321, COG3321, Polyketide synthase modules and related proteins
           [Secondary metabolites biosynthesis, transport, and
           catabolism].
          Length = 1061

 Score =  132 bits (334), Expect = 1e-31
 Identities = 95/312 (30%), Positives = 138/312 (44%), Gaps = 13/312 (4%)

Query: 3   TVLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQN----LSDLMWNGSQEELTAT 58
           TV  FPGQGSQ  GMGR+LY   P     F+ ++  L++     L ++++      L + 
Sbjct: 527 TVFVFPGQGSQWAGMGRELYALEPVFASAFDALEALLHRLLGFSLPEVIFAPDYPFLESI 586

Query: 59  CNAQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRA 118
             AQPAL AVS+A   +    G  V      V GHSLGE  A  AA   SL D +R+V  
Sbjct: 587 DFAQPALFAVSVALAALWRSWG--VIPG--AVIGHSLGELAAAVAAGVLSLEDALRVVAT 642

Query: 119 RGKSMQEAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAV 178
           RG+ MQ+    G G+M+A+  L             R  +  +A  N   QVVI+G  +A+
Sbjct: 643 RGRLMQQL--AGEGAMLAVE-LSLLAEVQELLALGRPQVP-LAAVNSPQQVVIAGDPEAI 698

Query: 179 KCAADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASP 238
                    +G  RA  L VS  FHS LM P+       L  +  + P +P++ N     
Sbjct: 699 AALIARLQAQG-VRARRLAVSHAFHSPLMDPILDEFAAALADLAPRPPQIPLISNVTGDL 757

Query: 239 VSSIDEISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSLSAVS 298
                  ++  V+ +   VR+ + I      G ++  EVG G VLT   K+  +      
Sbjct: 758 AGEPGGDAQYWVQHLRQPVRFADAIAAALADGARTFIEVGPGPVLTESIKQTLRDAILSI 817

Query: 299 ISKVEDIDLALR 310
            +   D    L 
Sbjct: 818 ATLRRDAPELLS 829


>gnl|CDD|144338 pfam00698, Acyl_transf_1, Acyl transferase domain. 
          Length = 319

 Score =  105 bits (263), Expect = 2e-23
 Identities = 66/236 (27%), Positives = 96/236 (40%), Gaps = 25/236 (10%)

Query: 4   VLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQ----NLSDLMWNGSQEELTATC 59
           V  F GQGSQ  GMG DL  + P         D         ++ D++ N  +  L    
Sbjct: 1   VFVFSGQGSQWAGMGMDLLKTSPVFAAAIARCDEAFKPQYGFSVLDVLRNNPEGLLERVD 60

Query: 60  NAQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRAR 119
             QPAL A+ +A   ++   G  V      V GHSLGE  A   A A SL +   +V  R
Sbjct: 61  VVQPALFAMQIALAALLRSYG--VTPAA--VVGHSLGEIAAAVVAGALSLEEAALVVALR 116

Query: 120 GKSMQEAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAV- 178
            + M++   P  G M A +GL    V+ +     RV    +A  N    VV++G Q+A+ 
Sbjct: 117 SRLMRQLAGP--GGMAA-VGLPAEEVEQLARWPDRV---VVAIVNSPRSVVVAGPQEALD 170

Query: 179 ----KCAADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPI 230
               +  A         RA  + V    HS  +  +   +   L  +  + P VP 
Sbjct: 171 EFVERVEARG------VRARVIAVDYASHSPQVEAIGDALALALADIAPRTPRVPF 220


>gnl|CDD|36416 KOG1202, KOG1202, KOG1202, Animal-type fatty acid synthase and
           related proteins [Lipid transport and metabolism].
          Length = 2376

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 54/224 (24%), Positives = 89/224 (39%), Gaps = 21/224 (9%)

Query: 7   FPGQGSQVIGMGRDLY--DSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCNAQPA 64
           + G GSQ  GM +DL   + F ++     EV      ++ D++    +       N+  +
Sbjct: 505 YSGMGSQWAGMAKDLMKLERFRDSIQRSAEVLKPFGLDVIDVLTRSDESTFDNILNSFVS 564

Query: 65  LTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARGKSMQ 124
           +TA+ +A   ++   G+        + GHSLGE     A    +   T+     RG+S+ 
Sbjct: 565 ITAIQIALTDLLSCLGI----RPDGIVGHSLGELGCGYADGCLTQEQTVLAAYWRGQSIL 620

Query: 125 EAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVKCAADT 184
           +   P  G+M A +GL      S C     V  C  + DN    V ISG Q +V      
Sbjct: 621 DTHLPK-GAMAA-VGLSWEQCKSRCPPDV-VPACHNSKDN----VTISGPQASV----FA 669

Query: 185 CLNKGAKRAVFLPV----SAPFHSSLMTPVSKVMKWMLDSVTKQ 224
            + +     VF          FHS  M   +  ++  L+ V  +
Sbjct: 670 FVEQLRAEGVFAKEVRTGGYAFHSPYMEAAAPPLRQSLEKVIPE 713


>gnl|CDD|33017 COG3204, COG3204, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 316

 Score = 29.9 bits (67), Expect = 1.0
 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 7   FPGQGSQVIGMGRDLYDSFPEARLVFEEVDHT-LNQNLSDLMWNGSQEELTATCNAQPAL 65
           F    +  + + R +     E R   +         N+S L +N     L A  N   A+
Sbjct: 51  FKAGQTNGLDLSRYIARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAI 110

Query: 66  TAVSMA--FIRVMEKNGLCVKRDISYVAG 92
             ++     IR +   G      I Y+ G
Sbjct: 111 VELTKEGDLIRTIPLTGFSDPETIEYIGG 139


>gnl|CDD|35813 KOG0593, KOG0593, KOG0593, Predicted protein kinase KKIAMRE
           [General function prediction only].
          Length = 396

 Score = 28.4 bits (63), Expect = 3.0
 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 8/58 (13%)

Query: 30  LVFEEVDHTLNQNLSDLMWNGSQEELTATCNAQPALTAVSMAFIRVMEKNGLCVKRDI 87
           LVFE  DHT+   L +   NG   EL      Q          I    KN  C+ RDI
Sbjct: 78  LVFEYCDHTVLHEL-ERYPNGVPSELVKKYLYQLLKA------IHFCHKNN-CIHRDI 127


>gnl|CDD|132856 cd07217, Pat17_PNPLA8_PNPLA9_like4, Patatin-like phospholipase.
           Patatin is a storage protein of the potato tuber that
           shows Phospholipase A2 activity (PLA2; EC 3.1.1.4).
           Patatin catalyzes the nonspecific hydrolysis of
           phospholipids, glycolipids, sulfolipids, and mono- and
           diacylglycerols, thereby showing lipid acyl hydrolase
           activity. The active site includes an oxyanion hole with
           a conserved GGxR motif; it is found in almost all the
           members of this family. The catalytic dyad is formed by
           a serine and an aspartate. Patatin belongs to the
           alpha-beta hydrolase family which is identified by a
           characteristic nucleophile elbow with a consensus
           sequence of Sm-X-Nu-Sm (Sm = small residue, X = any
           residue and Nu = nucleophile). Members of this family
           have been found also in vertebrates. This family
           includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9
           (iPLA2-beta) like phospholipases from human as well as
           the Pat17 isozyme from Solanum cardiophyllum.
          Length = 344

 Score = 28.2 bits (63), Expect = 3.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 89  YVAGHSLGEYTALCAAKAFSLSDTIRLVRARGKSM 123
           +V G S G   A C A   S++D +      G +M
Sbjct: 44  FVGGTSTGSIIAACIALGMSVTDLLSFYTLNGVNM 78


>gnl|CDD|36462 KOG1248, KOG1248, KOG1248, Uncharacterized conserved protein
           [Function unknown].
          Length = 1176

 Score = 27.2 bits (60), Expect = 6.7
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 195 FLPVSAPFHSSLMT-PVSKVMKWMLDSVTKQDPVVPILPNFCASPV---SSIDEISRLLV 250
            +P++            +     + D++   D +  +LP FC  PV    S  +++ +L 
Sbjct: 467 IVPLAMSLQLKAKKLKEAGSQVSLYDTL--VDQLWSLLPGFCNYPVDLAESFTDLAPILG 524

Query: 251 EQVTGRVRWRETI 263
             +  R   RETI
Sbjct: 525 AALLKRPELRETI 537


>gnl|CDD|144380 pfam00756, Esterase, Putative esterase.  This family contains
           Esterase D. However it is not clear if all members of
           the family have the same function. This family is
           related to the pfam00135 family.
          Length = 243

 Score = 27.0 bits (60), Expect = 6.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 90  VAGHSLGEYTALCAA 104
           +AG S+G   AL  A
Sbjct: 115 LAGQSMGGLGALYLA 129


>gnl|CDD|37277 KOG2066, KOG2066, KOG2066, Vacuolar assembly/sorting protein VPS41
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 846

 Score = 26.8 bits (59), Expect = 7.4
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 257 VRWRET-IQWFANHGVKSVYEVGSGKVLT 284
           ++WR   I W  + GVK VY+  + + LT
Sbjct: 166 IKWRGNLIAWANDDGVK-VYDTPTRQRLT 193


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0661    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,572,013
Number of extensions: 178597
Number of successful extensions: 464
Number of sequences better than 10.0: 1
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 14
Length of query: 314
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 220
Effective length of database: 4,232,491
Effective search space: 931148020
Effective search space used: 931148020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)