RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780536|ref|YP_003064949.1| acyl-carrier-protein S-malonyltransferase [Candidatus Liberibacter asiaticus str. psy62] (314 letters) >gnl|CDD|161724 TIGR00128, fabD, malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension. Length = 290 Score = 288 bits (740), Expect = 8e-79 Identities = 128/294 (43%), Positives = 171/294 (58%), Gaps = 4/294 (1%) Query: 1 MSTVLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCN 60 M FPGQGSQ +GMG+DLY+ +P A+ +F++ L +L L G EEL T Sbjct: 1 MKIAYVFPGQGSQTVGMGKDLYEQYPIAKELFDQASEALGYDLKKLCQEGPAEELNKTQY 60 Query: 61 AQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARG 120 QPAL VS +++ G +K D + AGHSLGEY+AL AA A ++LV+ RG Sbjct: 61 TQPALYVVSAILYLKLKEQG-GLKPD--FAAGHSLGEYSALVAAGALDFETALKLVKKRG 117 Query: 121 KSMQEAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVKC 180 + MQEAVP G G+M A+IGLD+ + C +A+ + ++AN N GQVVISG +D V+ Sbjct: 118 ELMQEAVPEGGGAMAAVIGLDEEQLAQACEEATENDV-DLANFNSPGQVVISGTKDGVEA 176 Query: 181 AADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASPVS 240 AA GAKRAV L VS FHS M P ++ L++ DP VP++ N A P + Sbjct: 177 AAALFKEMGAKRAVPLEVSGAFHSRFMKPAAEKFAETLEACQFNDPTVPVISNVDAKPYT 236 Query: 241 SIDEISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSL 294 + D I L EQ+T VRW ++++ GV EVG GKVLTGL KRI L Sbjct: 237 NGDRIKEKLSEQLTSPVRWTDSVEKLMARGVTEFAEVGPGKVLTGLIKRIKNDL 290 >gnl|CDD|178353 PLN02752, PLN02752, [acyl-carrier protein] S-malonyltransferase. Length = 343 Score = 201 bits (513), Expect = 2e-52 Identities = 104/300 (34%), Positives = 162/300 (54%), Gaps = 7/300 (2%) Query: 7 FPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCNAQPALT 66 FPGQG+Q +GMG++ P A+ +F++ L +L D+ NG +E+L +T +QPA+ Sbjct: 44 FPGQGAQAVGMGKEA-AEVPAAKALFDKASEILGYDLLDVCVNGPKEKLDSTVVSQPAIY 102 Query: 67 AVSMAFIRVM--EKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARGKSMQ 124 S+A + + G V + AG SLGEYTAL A A S D ++LV+ RG++MQ Sbjct: 103 VASLAAVEKLRARDGGQAVIDSVDVCAGLSLGEYTALVFAGALSFEDGLKLVKLRGEAMQ 162 Query: 125 EAVPPGLGSMVAIIGLDDCVVDSICAQASR-VG---ICEIANDNGGGQVVISGLQDAVKC 180 A G MV++IGLD V +CA A+ VG + +IAN G +SG + + Sbjct: 163 AAADAGPSGMVSVIGLDSDKVQELCAAANEEVGEDDVVQIANYLCPGNYAVSGGKKGIDA 222 Query: 181 AADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASPVS 240 + A+ V L V+ FH+S M P ++ L +V + P +P++ N A P S Sbjct: 223 VEAKAKSFKARMTVRLAVAGAFHTSFMEPAVDALEAALAAVEIRTPRIPVISNVDAQPHS 282 Query: 241 SIDEISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSLSAVSIS 300 I ++L QVT V+W T++ G++ YE+G GKV+ G+ KR+DK +++ Sbjct: 283 DPATIKKILARQVTSPVQWETTVKTLLEKGLEKSYELGPGKVIAGIVKRVDKGAKIENVT 342 >gnl|CDD|129060 smart00827, PKS_AT, Acyl transferase domain in polyketide synthase (PKS) enzymes. Length = 298 Score = 176 bits (449), Expect = 7e-45 Identities = 102/306 (33%), Positives = 144/306 (47%), Gaps = 32/306 (10%) Query: 7 FPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQ----NLSDLMWN--GSQEELTATCN 60 F GQGSQ GMGR+LY++ P R +E D L +L D+++ G+ L T Sbjct: 1 FTGQGSQWPGMGRELYETEPVFRAALDECDAALQPLLGWSLLDVLFGEDGAASLLRRTEV 60 Query: 61 AQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARG 120 AQPAL AV +A R+ G+ V GHSLGE A A SL D RLV ARG Sbjct: 61 AQPALFAVQVALARLWRSWGVRP----DAVVGHSLGEIAAAYVAGVLSLEDAARLVAARG 116 Query: 121 KSMQEAVPPGLGSMVAI-IGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVK 179 + MQ PG G+M+A+ + ++ V+ + A G +A NG VV+SG +DAV Sbjct: 117 RLMQAL--PGGGAMLAVGLSEEE--VEELLAG--YGGRVSVAAVNGPSSVVLSGDEDAVD 170 Query: 180 CAADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASPV 239 A +G RA L V FHS M P+ + L +T + P +P + S V Sbjct: 171 ELAAALEARG-IRARRLKVDHAFHSPHMDPILDEFREALAGITPRPPRIPFV-----STV 224 Query: 240 SS--IDEISRLL-----VEQVTGRVRWRETIQWFANHGVKSVY-EVGSGKVLTGLAKRID 291 + ID + L V + VR+ + ++ +V+ EVG VLTG K+ Sbjct: 225 TGELIDG-AELDDAEYWVRNLREPVRFADAVRALLAEQGVTVFLEVGPHPVLTGPIKQTL 283 Query: 292 KSLSAV 297 + Sbjct: 284 PAAGGA 289 >gnl|CDD|132175 TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group. Length = 295 Score = 175 bits (447), Expect = 1e-44 Identities = 98/306 (32%), Positives = 138/306 (45%), Gaps = 13/306 (4%) Query: 5 LTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCNAQPA 64 L FPGQGSQ GM +L D P V E L + +L E L +T +AQ Sbjct: 3 LLFPGQGSQRAGMLAELPDH-PAVAAVLAEASDVLGIDPRELD---DAEALASTRSAQLC 58 Query: 65 LTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARGKSMQ 124 + A +A R + + S VAG+S+GEY A A + D +RLV R M Sbjct: 59 ILAAGVAAWRALLALL--PRP--SAVAGYSVGEYAAAVVAGVLTFDDALRLVALRAALMD 114 Query: 125 EAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVKCAADT 184 +AVP G G M+A++GLD V+++ A+ +A N QVVI+G + A++ A+ Sbjct: 115 QAVPGGYG-MLAVLGLDLAAVEALIAKHG----VYLAIINAPDQVVIAGSRAALRAVAEL 169 Query: 185 CLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASPVSSIDE 244 GA RA L V P H+ L+ ++ L + P +P L A V + Sbjct: 170 ARAAGASRAKRLAVRVPSHTPLLAKAAEQFAEALAEIPLAAPRLPYLSGIDARLVRDAAQ 229 Query: 245 ISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSLSAVSISKVED 304 I L Q+ V W + +Q G + V E+G G VLT LA L A S Sbjct: 230 IRDDLARQIATPVDWHDCMQAAYERGARLVIELGPGDVLTKLANEAFPELPARSADDFRS 289 Query: 305 IDLALR 310 +D L Sbjct: 290 LDGLLA 295 >gnl|CDD|163029 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. Length = 2582 Score = 133 bits (336), Expect = 5e-32 Identities = 101/330 (30%), Positives = 145/330 (43%), Gaps = 33/330 (10%) Query: 7 FPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQN----LSDLMW----------NGSQ 52 F GQGSQ + MGR+L +FPE R ++D Q LS +++ + Sbjct: 585 FAGQGSQYLNMGRELACNFPEVRQAAADMDSVFTQAGKGALSPVLYPIPVFNDESRKAQE 644 Query: 53 EELTATCNAQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDT 112 E LT T +AQ A+ +SM ++ + G K D AGHS GE +ALCAA S D Sbjct: 645 EALTNTQHAQSAIGTLSMGQYKLFTQAGF--KAD--MTAGHSFGELSALCAAGVISDDDY 700 Query: 113 IRLVRARGKSMQEAVPPG---LGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQV 169 + L +RG++M A P G +G M A+I I IAN N Q+ Sbjct: 701 MMLAFSRGQAM--AAPTGEADIGFMYAVILAVVGSPTVIANCIKDFEGVSIANYNSPTQL 758 Query: 170 VISGLQDAVKCAADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVP 229 VI+G+ ++ AA KG K A+ LPVS FH+ L+ K +D P+VP Sbjct: 759 VIAGVSTQIQIAAKALKEKGFK-AIPLPVSGAFHTPLVAHAQKPFSAAIDKAKFNTPLVP 817 Query: 230 ILPNFCASPVSSID--EISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLA 287 + N + S D I + L + V + E ++ G + E G +L L Sbjct: 818 LYSNGTGK-LHSNDAAAIKKALKNHMLQSVHFSEQLEAMYAAGARVFVEFGPKNILQKLV 876 Query: 288 KRI--DKSLSAVSIS----KVEDIDLALRS 311 + DK +IS D D+ LR Sbjct: 877 ENTLKDKENELCAISINPNPKGDSDMQLRQ 906 >gnl|CDD|149298 pfam08161, NUC173, NUC173 domain. This is the central domain of of novel family of hypothetical nucleolar proteins. Length = 198 Score = 28.7 bits (65), Expect = 2.3 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 3/37 (8%) Query: 230 ILPNFCASP---VSSIDEISRLLVEQVTGRVRWRETI 263 +LP FC P S D + L + RV R TI Sbjct: 154 LLPGFCDLPLDLRESFDSFAETLGNALYERVELRTTI 190 >gnl|CDD|183713 PRK12740, PRK12740, elongation factor G; Reviewed. Length = 668 Score = 27.4 bits (62), Expect = 4.7 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 114 RLVRARGKSMQEAVPPGLGSMVAIIGLDDCVV-DSICAQA 152 RL R GK +E G +VA+ L D D++C + Sbjct: 334 RLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKG 373 >gnl|CDD|151613 pfam11171, DUF2958, Protein of unknown function (DUF2958). Some members are annotated as lipoproteins however this cannot be confirmed. This family of proteins has no known function. Length = 112 Score = 27.3 bits (61), Expect = 5.6 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 63 PALTAVSMAFIR-VMEKNGLCVKRDISYVAGHSLGEYTAL 101 P L VS++ + + GL ++RD+ + A L Y Sbjct: 64 PELGYVSLSELASIRGPLGLPIERDLYFRAEFPLSVYARA 103 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.133 0.389 Gapped Lambda K H 0.267 0.0635 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,961,781 Number of extensions: 308517 Number of successful extensions: 646 Number of sequences better than 10.0: 1 Number of HSP's gapped: 629 Number of HSP's successfully gapped: 14 Length of query: 314 Length of database: 5,994,473 Length adjustment: 93 Effective length of query: 221 Effective length of database: 3,984,929 Effective search space: 880669309 Effective search space used: 880669309 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (25.9 bits)