RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780536|ref|YP_003064949.1| acyl-carrier-protein
S-malonyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (314 letters)



>gnl|CDD|161724 TIGR00128, fabD, malonyl CoA-acyl carrier protein transacylase.
           The seed alignment for this family of proteins contains
           a single member each from a number of bacterial species
           but also an additional pair of closely related,
           uncharacterized proteins from B. subtilis, one of which
           has a long C-terminal extension.
          Length = 290

 Score =  288 bits (740), Expect = 8e-79
 Identities = 128/294 (43%), Positives = 171/294 (58%), Gaps = 4/294 (1%)

Query: 1   MSTVLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCN 60
           M     FPGQGSQ +GMG+DLY+ +P A+ +F++    L  +L  L   G  EEL  T  
Sbjct: 1   MKIAYVFPGQGSQTVGMGKDLYEQYPIAKELFDQASEALGYDLKKLCQEGPAEELNKTQY 60

Query: 61  AQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARG 120
            QPAL  VS      +++ G  +K D  + AGHSLGEY+AL AA A      ++LV+ RG
Sbjct: 61  TQPALYVVSAILYLKLKEQG-GLKPD--FAAGHSLGEYSALVAAGALDFETALKLVKKRG 117

Query: 121 KSMQEAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVKC 180
           + MQEAVP G G+M A+IGLD+  +   C +A+   + ++AN N  GQVVISG +D V+ 
Sbjct: 118 ELMQEAVPEGGGAMAAVIGLDEEQLAQACEEATENDV-DLANFNSPGQVVISGTKDGVEA 176

Query: 181 AADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASPVS 240
           AA      GAKRAV L VS  FHS  M P ++     L++    DP VP++ N  A P +
Sbjct: 177 AAALFKEMGAKRAVPLEVSGAFHSRFMKPAAEKFAETLEACQFNDPTVPVISNVDAKPYT 236

Query: 241 SIDEISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSL 294
           + D I   L EQ+T  VRW ++++     GV    EVG GKVLTGL KRI   L
Sbjct: 237 NGDRIKEKLSEQLTSPVRWTDSVEKLMARGVTEFAEVGPGKVLTGLIKRIKNDL 290


>gnl|CDD|178353 PLN02752, PLN02752, [acyl-carrier protein] S-malonyltransferase.
          Length = 343

 Score =  201 bits (513), Expect = 2e-52
 Identities = 104/300 (34%), Positives = 162/300 (54%), Gaps = 7/300 (2%)

Query: 7   FPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCNAQPALT 66
           FPGQG+Q +GMG++     P A+ +F++    L  +L D+  NG +E+L +T  +QPA+ 
Sbjct: 44  FPGQGAQAVGMGKEA-AEVPAAKALFDKASEILGYDLLDVCVNGPKEKLDSTVVSQPAIY 102

Query: 67  AVSMAFIRVM--EKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARGKSMQ 124
             S+A +  +     G  V   +   AG SLGEYTAL  A A S  D ++LV+ RG++MQ
Sbjct: 103 VASLAAVEKLRARDGGQAVIDSVDVCAGLSLGEYTALVFAGALSFEDGLKLVKLRGEAMQ 162

Query: 125 EAVPPGLGSMVAIIGLDDCVVDSICAQASR-VG---ICEIANDNGGGQVVISGLQDAVKC 180
            A   G   MV++IGLD   V  +CA A+  VG   + +IAN    G   +SG +  +  
Sbjct: 163 AAADAGPSGMVSVIGLDSDKVQELCAAANEEVGEDDVVQIANYLCPGNYAVSGGKKGIDA 222

Query: 181 AADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASPVS 240
                 +  A+  V L V+  FH+S M P    ++  L +V  + P +P++ N  A P S
Sbjct: 223 VEAKAKSFKARMTVRLAVAGAFHTSFMEPAVDALEAALAAVEIRTPRIPVISNVDAQPHS 282

Query: 241 SIDEISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSLSAVSIS 300
               I ++L  QVT  V+W  T++     G++  YE+G GKV+ G+ KR+DK     +++
Sbjct: 283 DPATIKKILARQVTSPVQWETTVKTLLEKGLEKSYELGPGKVIAGIVKRVDKGAKIENVT 342


>gnl|CDD|129060 smart00827, PKS_AT, Acyl transferase domain in polyketide synthase
           (PKS) enzymes. 
          Length = 298

 Score =  176 bits (449), Expect = 7e-45
 Identities = 102/306 (33%), Positives = 144/306 (47%), Gaps = 32/306 (10%)

Query: 7   FPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQ----NLSDLMWN--GSQEELTATCN 60
           F GQGSQ  GMGR+LY++ P  R   +E D  L      +L D+++   G+   L  T  
Sbjct: 1   FTGQGSQWPGMGRELYETEPVFRAALDECDAALQPLLGWSLLDVLFGEDGAASLLRRTEV 60

Query: 61  AQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARG 120
           AQPAL AV +A  R+    G+        V GHSLGE  A   A   SL D  RLV ARG
Sbjct: 61  AQPALFAVQVALARLWRSWGVRP----DAVVGHSLGEIAAAYVAGVLSLEDAARLVAARG 116

Query: 121 KSMQEAVPPGLGSMVAI-IGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVK 179
           + MQ    PG G+M+A+ +  ++  V+ + A     G   +A  NG   VV+SG +DAV 
Sbjct: 117 RLMQAL--PGGGAMLAVGLSEEE--VEELLAG--YGGRVSVAAVNGPSSVVLSGDEDAVD 170

Query: 180 CAADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASPV 239
             A     +G  RA  L V   FHS  M P+    +  L  +T + P +P +     S V
Sbjct: 171 ELAAALEARG-IRARRLKVDHAFHSPHMDPILDEFREALAGITPRPPRIPFV-----STV 224

Query: 240 SS--IDEISRLL-----VEQVTGRVRWRETIQWFANHGVKSVY-EVGSGKVLTGLAKRID 291
           +   ID  + L      V  +   VR+ + ++        +V+ EVG   VLTG  K+  
Sbjct: 225 TGELIDG-AELDDAEYWVRNLREPVRFADAVRALLAEQGVTVFLEVGPHPVLTGPIKQTL 283

Query: 292 KSLSAV 297
            +    
Sbjct: 284 PAAGGA 289


>gnl|CDD|132175 TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit. 
           Members of this protein family are the epsilon subunit
           of malonate decarboxylase. This subunit has
           malonyl-CoA/dephospho-CoA acyltransferase activity.
           Malonate decarboxylase may be a soluble enzyme, or
           linked to membrane subunits and active as a sodium pump.
           The epsilon subunit is closely related to the malonyl
           CoA-acyl carrier protein (ACP) transacylase family
           described by TIGR00128, but acts on an ACP subunit of
           malonate decarboxylase that has an unusual coenzyme A
           derivative as its prothetic group.
          Length = 295

 Score =  175 bits (447), Expect = 1e-44
 Identities = 98/306 (32%), Positives = 138/306 (45%), Gaps = 13/306 (4%)

Query: 5   LTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCNAQPA 64
           L FPGQGSQ  GM  +L D  P    V  E    L  +  +L      E L +T +AQ  
Sbjct: 3   LLFPGQGSQRAGMLAELPDH-PAVAAVLAEASDVLGIDPRELD---DAEALASTRSAQLC 58

Query: 65  LTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARGKSMQ 124
           + A  +A  R +       +   S VAG+S+GEY A   A   +  D +RLV  R   M 
Sbjct: 59  ILAAGVAAWRALLALL--PRP--SAVAGYSVGEYAAAVVAGVLTFDDALRLVALRAALMD 114

Query: 125 EAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVKCAADT 184
           +AVP G G M+A++GLD   V+++ A+        +A  N   QVVI+G + A++  A+ 
Sbjct: 115 QAVPGGYG-MLAVLGLDLAAVEALIAKHG----VYLAIINAPDQVVIAGSRAALRAVAEL 169

Query: 185 CLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASPVSSIDE 244
               GA RA  L V  P H+ L+   ++     L  +    P +P L    A  V    +
Sbjct: 170 ARAAGASRAKRLAVRVPSHTPLLAKAAEQFAEALAEIPLAAPRLPYLSGIDARLVRDAAQ 229

Query: 245 ISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSLSAVSISKVED 304
           I   L  Q+   V W + +Q     G + V E+G G VLT LA      L A S      
Sbjct: 230 IRDDLARQIATPVDWHDCMQAAYERGARLVIELGPGDVLTKLANEAFPELPARSADDFRS 289

Query: 305 IDLALR 310
           +D  L 
Sbjct: 290 LDGLLA 295


>gnl|CDD|163029 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
           synthase PfaA.  Members of the seed for this alignment
           are involved in omega-3 polyunsaturated fatty acid
           biosynthesis, such as the protein PfaA from the
           eicosapentaenoic acid biosynthesis operon in
           Photobacterium profundum strain SS9. PfaA is encoded
           together with PfaB, PfaC, and PfaD, and the functions of
           the individual polypeptides have not yet been described.
           More distant homologs of PfaA, also included with the
           reach of this model, appear to be involved in
           polyketide-like biosynthetic mechanisms of
           polyunsaturated fatty acid biosynthesis, an alternative
           to the more familiar iterated mechanism of chain
           extension and desaturation, and in most cases are
           encoded near genes for homologs of PfaB, PfaC, and/or
           PfaD.
          Length = 2582

 Score =  133 bits (336), Expect = 5e-32
 Identities = 101/330 (30%), Positives = 145/330 (43%), Gaps = 33/330 (10%)

Query: 7   FPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQN----LSDLMW----------NGSQ 52
           F GQGSQ + MGR+L  +FPE R    ++D    Q     LS +++             +
Sbjct: 585 FAGQGSQYLNMGRELACNFPEVRQAAADMDSVFTQAGKGALSPVLYPIPVFNDESRKAQE 644

Query: 53  EELTATCNAQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDT 112
           E LT T +AQ A+  +SM   ++  + G   K D    AGHS GE +ALCAA   S  D 
Sbjct: 645 EALTNTQHAQSAIGTLSMGQYKLFTQAGF--KAD--MTAGHSFGELSALCAAGVISDDDY 700

Query: 113 IRLVRARGKSMQEAVPPG---LGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQV 169
           + L  +RG++M  A P G   +G M A+I         I           IAN N   Q+
Sbjct: 701 MMLAFSRGQAM--AAPTGEADIGFMYAVILAVVGSPTVIANCIKDFEGVSIANYNSPTQL 758

Query: 170 VISGLQDAVKCAADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVP 229
           VI+G+   ++ AA     KG K A+ LPVS  FH+ L+    K     +D      P+VP
Sbjct: 759 VIAGVSTQIQIAAKALKEKGFK-AIPLPVSGAFHTPLVAHAQKPFSAAIDKAKFNTPLVP 817

Query: 230 ILPNFCASPVSSID--EISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLA 287
           +  N     + S D   I + L   +   V + E ++     G +   E G   +L  L 
Sbjct: 818 LYSNGTGK-LHSNDAAAIKKALKNHMLQSVHFSEQLEAMYAAGARVFVEFGPKNILQKLV 876

Query: 288 KRI--DKSLSAVSIS----KVEDIDLALRS 311
           +    DK     +IS       D D+ LR 
Sbjct: 877 ENTLKDKENELCAISINPNPKGDSDMQLRQ 906


>gnl|CDD|149298 pfam08161, NUC173, NUC173 domain.  This is the central domain of of
           novel family of hypothetical nucleolar proteins.
          Length = 198

 Score = 28.7 bits (65), Expect = 2.3
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 3/37 (8%)

Query: 230 ILPNFCASP---VSSIDEISRLLVEQVTGRVRWRETI 263
           +LP FC  P     S D  +  L   +  RV  R TI
Sbjct: 154 LLPGFCDLPLDLRESFDSFAETLGNALYERVELRTTI 190


>gnl|CDD|183713 PRK12740, PRK12740, elongation factor G; Reviewed.
          Length = 668

 Score = 27.4 bits (62), Expect = 4.7
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 114 RLVRARGKSMQEAVPPGLGSMVAIIGLDDCVV-DSICAQA 152
           RL R  GK  +E      G +VA+  L D    D++C + 
Sbjct: 334 RLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKG 373


>gnl|CDD|151613 pfam11171, DUF2958, Protein of unknown function (DUF2958).  Some
           members are annotated as lipoproteins however this
           cannot be confirmed. This family of proteins has no
           known function.
          Length = 112

 Score = 27.3 bits (61), Expect = 5.6
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 63  PALTAVSMAFIR-VMEKNGLCVKRDISYVAGHSLGEYTAL 101
           P L  VS++ +  +    GL ++RD+ + A   L  Y   
Sbjct: 64  PELGYVSLSELASIRGPLGLPIERDLYFRAEFPLSVYARA 103


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,961,781
Number of extensions: 308517
Number of successful extensions: 646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 629
Number of HSP's successfully gapped: 14
Length of query: 314
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 221
Effective length of database: 3,984,929
Effective search space: 880669309
Effective search space used: 880669309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)