RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780536|ref|YP_003064949.1| acyl-carrier-protein
S-malonyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(314 letters)
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Escherichia coli
[TaxId: 562]}
Length = 235
Score = 107 bits (269), Expect = 1e-24
Identities = 55/123 (44%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 7 FPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCNAQPALT 66
FPGQGSQ +GM D+ S+P F E L +L L G EEL T QPAL
Sbjct: 6 FPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQPALL 65
Query: 67 AVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARGKSMQEA 126
S+A RV ++ G + + +AGHSLGEY+AL A +D +RLV RGK MQEA
Sbjct: 66 TASVALYRVWQQQGG---KAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGKFMQEA 122
Query: 127 VPP 129
VP
Sbjct: 123 VPE 125
Score = 96.4 bits (239), Expect = 3e-21
Identities = 40/120 (33%), Positives = 64/120 (53%)
Query: 190 AKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASPVSSIDEISRLL 249
K P H +LM P + + L +T P VP++ N ++ D I L
Sbjct: 116 GKFMQEAVPEVPSHCALMKPAADKLAVELAKITFNAPTVPVVNNVDVKCETNGDAIRDAL 175
Query: 250 VEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSLSAVSISKVEDIDLAL 309
V Q+ V+W +++++ A GV+ +YEVG GKVLTGL KRI +L+A ++++ + AL
Sbjct: 176 VRQLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVLTGLTKRIVDTLTASALNEPSAMAAAL 235
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Streptomyces
coelicolor A3(2) [TaxId: 100226]}
Length = 253
Score = 98.4 bits (244), Expect = 7e-22
Identities = 29/114 (25%), Positives = 39/114 (34%), Gaps = 6/114 (5%)
Query: 4 VLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCNAQP 63
VL PGQG+Q G D P A + +L+ +E+ T AQP
Sbjct: 4 VLVAPGQGAQTPGFLTDWLA-LPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQP 62
Query: 64 ALTAVSMAFIRVMEKNGLCVKRDI-----SYVAGHSLGEYTALCAAKAFSLSDT 112
L A + + VAGHS+GE TA A +
Sbjct: 63 LLVAAGILSAAALGTQTSVADATGPGFTPGAVAGHSVGEITAAVFAGVLDDTAA 116
Score = 85.7 bits (211), Expect = 5e-18
Identities = 35/114 (30%), Positives = 54/114 (47%)
Query: 199 SAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASPVSSIDEISRLLVEQVTGRVR 258
+ FH+ M P + ++T DP V + N V+S E+ LV QV VR
Sbjct: 136 AGAFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGRAVASGTEVLDRLVGQVANPVR 195
Query: 259 WRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSLSAVSISKVEDIDLALRSI 312
W ++ F GV ++ EV G LTGLAKR + +++ +D+D A +
Sbjct: 196 WDLCMETFKELGVTAIIEVCPGGTLTGLAKRALPGVKTLALKTPDDLDAARELV 249
>d1mlaa2 d.58.23.1 (A:128-197) Probable ACP-binding domain of
malonyl-CoA ACP transacylase {Escherichia coli [TaxId:
562]}
Length = 70
Score = 73.4 bits (180), Expect = 2e-14
Identities = 33/70 (47%), Positives = 43/70 (61%)
Query: 130 GLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVKCAADTCLNKG 189
G G+M AIIGLDD + C +A+ + N N GQVVI+G ++AV+ A C G
Sbjct: 1 GTGAMAAIIGLDDASIAKACEEAAEGQVVSPVNFNSPGQVVIAGHKEAVERAGAACKAAG 60
Query: 190 AKRAVFLPVS 199
AKRA+ LPVS
Sbjct: 61 AKRALPLPVS 70
>d1nm2a2 d.58.23.1 (A:134-195) Probable ACP-binding domain of
malonyl-CoA ACP transacylase {Streptomyces coelicolor
A3(2) [TaxId: 100226]}
Length = 62
Score = 54.0 bits (130), Expect = 1e-08
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 132 GSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVKCAADTCLNKGAK 191
M A++G D V + + AN NG GQ+V +G + + + +G +
Sbjct: 2 TGMSALLGGDPEVSVAHLERLG----LTPANVNGAGQIVAAGTMEQLAALNE-DKPEGVR 56
Query: 192 RAVFL 196
+ V L
Sbjct: 57 KVVPL 61
>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase,
middle domain {Escherichia coli [TaxId: 562]}
Length = 179
Score = 29.0 bits (64), Expect = 0.51
Identities = 11/64 (17%), Positives = 23/64 (35%)
Query: 131 LGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVKCAADTCLNKGA 190
L V L + + + + D+G +I G A++ A + +G
Sbjct: 114 LNHTVTADQLQAFDETILASGIPNRALAQPLIDSGKTVHLIGGCDVAMELDARRAIAQGT 173
Query: 191 KRAV 194
+ A+
Sbjct: 174 RLAL 177
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 824
Score = 28.1 bits (62), Expect = 0.95
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 14/66 (21%)
Query: 258 RWRETIQWFANHGVKSVY----EVGSGKVLT------GLAKRIDKSLSA--VSISKVEDI 305
RW T Q + K +Y E G+ L L D++ + + ++E+I
Sbjct: 55 RWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEI 114
Query: 306 --DLAL 309
D L
Sbjct: 115 EEDAGL 120
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 70
Score = 25.2 bits (55), Expect = 6.6
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 136 AIIGLDDCVVDSICAQA-SRVGICEIANDNGGGQVVISGLQDAVKCA 181
IIG ++ I + +++ I + G QV I+G ++ A
Sbjct: 15 CIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLA 61
>d1pjqa2 c.90.1.1 (A:216-457) Siroheme synthase CysG, domains 4 and
5 {Salmonella typhimurium [TaxId: 90371]}
Length = 242
Score = 25.3 bits (54), Expect = 6.8
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 257 VRWRETIQWFANH 269
V R+ + WF+NH
Sbjct: 230 VALRDKLNWFSNH 242
>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 138
Score = 25.0 bits (54), Expect = 8.7
Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 70 MAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARGKSMQEAVPP 129
AF RV G + G + R+V G+ ++
Sbjct: 52 YAFGRVF--AGTVKSGQKVRI----QGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDC 105
Query: 130 GLGSMVAIIGLDDCVV--DSIC 149
G+++ ++G+D ++ ++
Sbjct: 106 PAGNIIGLVGIDQFLLKTGTLT 127
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.389
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,112,124
Number of extensions: 49317
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 14
Length of query: 314
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,240,546
Effective search space: 284085034
Effective search space used: 284085034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)