HHsearch alignment for GI: 254780537 and conserved domain: cd01016
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=100.00 E-value=0 Score=505.56 Aligned_cols=270 Identities=26% Similarity=0.428 Sum_probs=252.5
Q ss_pred CCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 82899975289999998518914899962688980120227124577603789999887610689999974235575211
Q gi|254780537|r 23 KKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIIT 102 (294)
Q Consensus 23 ~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~ 102 (294)
T Consensus 1 kP~Vvtt~~pl~~iv~~I~Gd~v~V~~lv~~g~dPH~yep~p~d~~~l~~ADlii~~G~~lE~~~~~~~~~~~~~~~v~~ 80 (276)
T cd01016 1 KPNVVTTTGMIADAVENIGGDHVEVTGLMGPGVDPHLYKATAGDVEKLQNADVVFYNGLHLEGKMSDVLSKLGSSKSVIA 80 (276)
T ss_pred CCEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 99899968099999999808816999802889896468799999999967999998488631789999985458984797
Q ss_pred CCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 12374202221001233463011122135678999999999864318889999998998630145533789988630784
Q gi|254780537|r 103 VTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDP 182 (294)
Q Consensus 103 ~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~ 182 (294)
T Consensus 81 ~~~~~~~~~~~-~~~~~~~~DPHiWldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~Ld~~~~~~l~~~p~ 159 (276)
T cd01016 81 LEDTLDRSQLI-LDEEEGTYDPHIWFDVKLWKYAVKAVAEVLSEKLPEHKDEFQANSEAYVEELDSLDAYAKKKIAEIPE 159 (276)
T ss_pred EECCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 02466744456-55568999986447999999999999999998683128999999999999999999999998622555
Q ss_pred CCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE--
Q ss_conf 473699826652145775297288722688640007899999997620169718998278997999999998299344--
Q gi|254780537|r 183 EKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYG-- 260 (294)
Q Consensus 183 ~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~-- 260 (294)
T Consensus 160 ~~r~~vt~H~Af~Yfa~~ygl~~~~~~~~~~~~epsp~~l~~li~~ik~~~v~~If~E~~~~~k~~~~i~~~~~a~~~~~ 239 (276)
T cd01016 160 QQRVLVTAHDAFGYFGRAYGFEVKGLQGISTDSEAGLRDINELVDLIVERKIKAIFVESSVNQKSIEALQDAVKARGHDV 239 (276)
T ss_pred CCEEEEEECCCHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEE
T ss_conf 56089984640677998669827314246888888979999999999983999999848999599999999983357424
Q ss_pred ---EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf ---432012378777886899999999999998620
Q gi|254780537|r 261 ---GVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 261 ---~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL 293 (294)
T Consensus 240 ~~~~~l~~d~~~~~~~~~~tY~~~M~~N~~~l~eaL 275 (276)
T cd01016 240 QIGGELYSDAMGEEGTSEGTYIGMFKHNVDTIVEAL 275 (276)
T ss_pred EECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 316712323678889987778999999999999972