HHsearch alignment for GI: 254780537 and conserved domain: cd01017
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=100.00 E-value=0 Score=490.06 Aligned_cols=271 Identities=27% Similarity=0.459 Sum_probs=249.0
Q ss_pred CCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCC-CCCC
Q ss_conf 588289997528999999851891489996268898012022712457760378999988761068999997423-5575
Q gi|254780537|r 21 TQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLK-KGTK 99 (294)
Q Consensus 21 ~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~-~~~~ 99 (294)
T Consensus 1 sgki~Vv~S~~p~~~lv~~I~Gd~v~V~~lv~~g~dPH~yep~p~d~~~l~~Adli~~nG~~lE~~l~~~~~~~~~~~~~ 80 (282)
T cd01017 1 SGKLKVVTTFYPLYEFTKAIGGDKADVKLIIPAGTEPHDFEPSPKDIARIADADVFVYNGLGMETWAEKVLKSLQNKKLK 80 (282)
T ss_pred CCCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCE
T ss_conf 99828999888999999998199448998159897963675899999999669999991878368999999853689977
Q ss_pred CCCCCCCCCHHHHH--------HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 21112374202221--------0012334630111221356789999999998643188899999989986301455337
Q gi|254780537|r 100 IITVTDGINPIGVS--------EDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSIL 171 (294)
Q Consensus 100 ~i~~~~~i~~~~~~--------~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~ 171 (294)
T Consensus 81 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~ 160 (282)
T cd01017 81 VVEASKGIKLLKAGGAEHDHDHSHSHHHGDYDPHVWLSPVLAIQQVENIKDALIKLDPDNKEYYEKNAAAYAKKLEALDQ 160 (282)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99877895235567765555555445579999825578155999999999999986844179999999999999999999
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 89988630784473699826652145775297288722688640007899999997620169718998278997999999
Q gi|254780537|r 172 PLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV 251 (294)
Q Consensus 172 ~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i 251 (294)
T Consensus 161 ~~~~~l~~~--~~~~~v~~H~af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~i 238 (282)
T cd01017 161 EYRAKLAKA--KGKTFVTQHAAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVKYIFFEENASSKIAETL 238 (282)
T ss_pred HHHHHHHCC--CCCCEEEECCHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
T ss_conf 999987443--678568735337899986698486543348888999999999999999859989998189990999999
Q ss_pred HHHHCCCEEEEEECCCCCCCC-CCCCCHHHHHHHHHHHHHHHC
Q ss_conf 998299344432012378777-886899999999999998620
Q gi|254780537|r 252 AYETNASYGGVLYVDSLSKPD-GPAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 252 a~e~~~~~~~~~~~d~l~~~~-~~~~~Y~~~m~~N~~~l~~aL 293 (294)
T Consensus 239 a~e~g~~v~~l~pl~~~~~~~~~~~~~Y~~~m~~N~~~i~~aL 281 (282)
T cd01017 239 AKETGAKLLVLNPLETLTKEEIDDGKDYFSLMKENLETLKRAL 281 (282)
T ss_pred HHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9981996785447666652348873669999999999999970