HHsearch alignment for GI: 254780537 and conserved domain: cd01019
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=100.00 E-value=0 Score=486.92 Aligned_cols=267 Identities=24% Similarity=0.371 Sum_probs=236.5
Q ss_pred CCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCC
Q ss_conf 58828999752899999985189148999626889801202271245776037899998876106899999742355752
Q gi|254780537|r 21 TQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKI 100 (294)
Q Consensus 21 ~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~ 100 (294)
T Consensus 1 aak~~Vvts~~pl~~i~~~I~Gd~v~V~~L~p~g~dpH~yep~p~d~~~l~~Adliv~~G~~lE~wl~k~~~~~~~-~~~ 79 (286)
T cd01019 1 AAEASVLTSIKPLGFIAAAIMGGVGEVEVLVPPGASPHDYELRPSDARKLQEADLVVWIGPDLEAFLDKVLQGRKK-GKV 79 (286)
T ss_pred CCCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCC-CCE
T ss_conf 9998799987799999999828953799805999897367689999999966999999699724689999974778-883
Q ss_pred CCCCCCCCH--HH----------------HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 111237420--22----------------210012334630111221356789999999998643188899999989986
Q gi|254780537|r 101 ITVTDGINP--IG----------------VSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREY 162 (294)
Q Consensus 101 i~~~~~i~~--~~----------------~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~ 162 (294)
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~DPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~ 159 (286)
T cd01019 80 LTLAKLIDLKTLEDGASHGDHEHDHEHAHGEHDGHEEGGLDPHLWLSPENAAEVAQAVAEKLSALDPDNAATYAANLEAF 159 (286)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 78533556554334443455455555555654445568999816348477999999999999886822099999999999
Q ss_pred HCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 30145533789988630784473699826652145775297288722688640007899999997620169718998278
Q gi|254780537|r 163 SEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSEST 242 (294)
Q Consensus 163 ~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~ 242 (294)
T Consensus 160 ~~~L~~l~~~~~~~l~~~--~~~~~v~~H~af~Yfa~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~ 237 (286)
T cd01019 160 NARLAELDATIKERLAPV--KTKPFFVFHDAYGYFEKRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKGATCVFAEPQ 237 (286)
T ss_pred HHHHHHHHHHHHHHHCCC--CCCEEEEECCCHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 999999999999974455--652289856636899986698386787224677899999999999999839988998289
Q ss_pred CCHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCCCHHHHHHHHHHHHHHHC
Q ss_conf 997999999998299344432012378777-886899999999999998620
Q gi|254780537|r 243 NSDQPAKQVAYETNASYGGVLYVDSLSKPD-GPAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 243 ~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~-~~~~~Y~~~m~~N~~~l~~aL 293 (294)
T Consensus 238 ~~~k~a~~ia~e~g~~v~~---ld~l~~~~~~~~~~Y~~~m~~n~~~i~~aL 286 (286)
T cd01019 238 FHPKIAETLAEGTGAKVGE---LDPLGGLIELGKNSYVNFLRNLADSLASCL 286 (286)
T ss_pred CCHHHHHHHHHHCCCCEEE---ECCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 8939999999971993899---637767788874069999999999999769