HHsearch alignment for GI: 254780537 and conserved domain: cd01145
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=100.00 E-value=0 Score=368.30 Aligned_cols=197 Identities=23% Similarity=0.306 Sum_probs=173.2
Q ss_pred CCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 88289997528999999851891489996268898012022712457760378999988761068999997423557521
Q gi|254780537|r 22 QKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKII 101 (294)
Q Consensus 22 ~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i 101 (294)
T Consensus 1 a~l~Vvts~~pl~~iv~~I~Gd~v~V~~Lvp~g~dPH~yep~p~d~~~l~~Adlv~~~G~~lE~~~~k~~~~~~~~~-~~ 79 (203)
T cd01145 1 AALNVVVTFPDLKDLVREVAGDAVIVSALTPPGVDPHQYQLKPSDIAKMRKADLVVTSGHELEGFEPKLAELSSNSK-VQ 79 (203)
T ss_pred CCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCC-CC
T ss_conf 99679998779999999983995389980698989756658999999983897999948870779999998656875-21
Q ss_pred CCCC------CCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 1123------7420222100123346301112213567899999999986431888999999899863014553378998
Q gi|254780537|r 102 TVTD------GINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKT 175 (294)
Q Consensus 102 ~~~~------~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~ 175 (294)
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~ 159 (203)
T cd01145 80 PGIKILIEDSDTVGMVDRAMGDYHGKGNPHVWLDPNNAPALAKALADALIELDPSEQEEYKENLRVFLAKLNKLLREWER 159 (203)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 13101222345555456555556799998014799999999999999999868460899999999999999999999999
Q ss_pred HHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHH
Q ss_conf 8630784473699826652145775297288722688640007899
Q gi|254780537|r 176 RIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSM 221 (294)
Q Consensus 176 ~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~ 221 (294)
T Consensus 160 ~~~--~~~~~~~v~~H~af~Yfa~~ygl~~~~~~~~~p~~~Ps~~h 203 (203)
T cd01145 160 QFE--GLKGIQVVAYHPSYQYLADWLGIEVVASLEPLPELPPTSSH 203 (203)
T ss_pred HHC--CCCCCEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCCCC
T ss_conf 737--76799799978737999997799798987569998989998