HHsearch results for GI: 254780537 and protein with PDBid: 1toa_A
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=100.00 E-value=0 Score=476.65 Aligned_cols=278 Identities=24% Similarity=0.391 Sum_probs=253.0
Q ss_pred HCCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 60464335882899975289999998518914899962688980120227124577603789999887610689999974
Q gi|254780537|r 14 PMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTN 93 (294)
Q Consensus 14 ~~~~~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~ 93 (294)
.+...++++||+||||++||+++|++|+||+++|++|+|+|.|||+|+|+|+|+++|++|||||+||.+||+|+.+++.+
T Consensus 29 ~~~~~~~~~k~~VV~T~~pl~~iv~~I~gd~v~V~~Lip~g~dPH~yep~p~di~~l~~ADliv~~G~~~E~~~~~~~~~ 108 (313)
T 1toa_A 29 GSKDAAADGKPLVVTTIGMIADAVKNIAQGDVHLKGLMGPGVDPHLYTATAGDVEWLGNADLILYNGLHLETKMGEVFSK 108 (313)
T ss_dssp --------CCCEEEESSHHHHHHHHHHHGGGSEEEESCCTTCCTTTCCCCHHHHHHHHHCSEEEECCTTCSTTCHHHHHH
T ss_pred CCCCCCCCCCCEEEEECHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
T ss_conf 78531016994799988599999999808815999815989796567689999999971999998389866678999986
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 23557521112374202221001233463011122135678999999999864318889999998998630145533789
Q gi|254780537|r 94 LKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPL 173 (294)
Q Consensus 94 ~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~ 173 (294)
...+..++...+..+.. ...++++++.|||+|+||.|++.++++|+++|+++||++++.|++|+++|.++|++|+.++
T Consensus 109 ~~~~~~v~~~~~~~~~~--~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~n~~~~~~~L~~L~~~~ 186 (313)
T 1toa_A 109 LRGSRLVVAVSETIPVS--QRLSLEEAEFDPHVWFDVKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYV 186 (313)
T ss_dssp HTTSSEEEEGGGGSCGG--GSCBSTTSCBCCCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCH--HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 14666531124677710--2125455655665211705799999999999987584237999999999999999999999
Q ss_pred HHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 98863078447369982665214577529728872268864000789999999762016971899827899799999999
Q gi|254780537|r 174 KTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAY 253 (294)
Q Consensus 174 ~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~ 253 (294)
+..+..+|..+|.++++|++|+||+++|||++.++.+.+++.+||+++++++++.||+++|+|||+|++++++.++.|++
T Consensus 187 ~~~~~~~~~~~~~~v~~H~a~~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~ 266 (313)
T 1toa_A 187 RRKAQSLPAERRVLVTAHDAFGYFSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLPAIFIESSIPHKNVEALRD 266 (313)
T ss_dssp HHHHHTSCGGGCEEEEEESCCHHHHHHHTCEEEEEECSSCSSCCCHHHHHHHHHHHHHTTCSEEEEETTSCTHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEECCHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
T ss_conf 99987643035510102667999999769972422356887431468999999999984998899848989099999999
Q ss_pred HHCCCEE-----EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 8299344-----432012378777886899999999999998620
Q gi|254780537|r 254 ETNASYG-----GVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 254 e~~~~~~-----~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL 293 (294)
+++++.. ..++.|++++++..+++|++||+.|+++|++||
T Consensus 267 ~~~~k~~~v~~~~~l~~d~l~~~~~~~~~Y~~~m~~N~~~i~~aL 311 (313)
T 1toa_A 267 AVQARGHVVQIGGELFSDAMGDAGTSEGTYVGMVTHNIDTIVAAL 311 (313)
T ss_dssp HHHTTTCCCEEEEEECSSSCCCTTSGGGSHHHHHHHHHHHHHHHH
T ss_pred HHCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 867884132457723544456788886779999999999999986