HHSEARCH alignment of GI: 254780537 and SCOP domain: d1psza_

Alignment
>d1psza_ c.92.2.2 (A:) Pneumococcal surface antigen PssA {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}
Probab=100.00  E-value=0  Score=474.91  Aligned_cols=275  Identities=34%  Similarity=0.613  Sum_probs=252.4

Q ss_pred             CCCCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCC-
Q ss_conf             4335882899975289999998518914899962688980120227124577603789999887610689999974235-
Q gi|254780537|r   18 SATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKK-   96 (294)
Q Consensus        18 ~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~-   96 (294)
                      +.+.+|++||||++||+++|++|+||+++|++|+|+|.|||+|||+|+|+++|++||||||||.+||+|+.+++.+... 
T Consensus         4 ~~~~~kl~VVat~~~l~~iv~~I~Gd~v~V~~L~p~g~dPH~yep~p~d~~~l~~ADliv~~G~~~E~~~~~~~~~~~~~   83 (286)
T d1psza_           4 TTSGQKLKVVATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVEN   83 (286)
T ss_dssp             GGGSCCEEEEEEEHHHHHHHHHHHGGGEEEEEEECTTSCSSSCCCCHHHHHHHHHCSEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             77899957999771999999998098259998069897985675899999999709999987988632577889988654


Q ss_pred             -----CCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             -----575211123742022210012334630111221356789999999998643188899999989986301455337
Q gi|254780537|r   97 -----GTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSIL  171 (294)
Q Consensus        97 -----~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~  171 (294)
                           ....+...++++.... ++++++++.|||+|+||.|++.++++|+++|+++||+++++|++|+++|.++|++|+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dPH~Wldp~~~~~~a~~i~~~L~~~dP~~~~~y~~n~~~~~~~l~~l~~  162 (286)
T d1psza_          84 AKKTENKDYFAVSDGVDVIYL-EGQNEKGKEDPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDK  162 (286)
T ss_dssp             TTCCBTTTEEETTTTSCCCBS-TTCCSTTCBCCCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCCCEEEEECCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             302565148983166311334-5666555566443568888999999999999885801268999999998767888889


Q ss_pred             HHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf             89988630784473699826652145775297288722688640007899999997620169718998278997999999
Q gi|254780537|r  172 PLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV  251 (294)
Q Consensus       172 ~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i  251 (294)
                      +++.+++++|..+|.++++|++|+||+++|||++.++.+.+++.+||+++++++++.||+++|+|||+|++++++.++.|
T Consensus       163 ~~~~~~~~~~~~~~~~i~~H~a~~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~l  242 (286)
T d1psza_         163 ESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMKTV  242 (286)
T ss_dssp             HHTTTTTTSCTTTCCEEEEECCCHHHHHHHTCCEEEEESSTTSCSSCHHHHHHHHHHHHTSCCCCEEEETTSCSHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
T ss_conf             99998765214535999744403667774487420102105633457168999999988378259999088892999999


Q ss_pred             HHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             998299344432012378777886899999999999998620
Q gi|254780537|r  252 AYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       252 a~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL  293 (294)
                      |+++|++++.++++|++++.+..+++|++||++|+++|++||
T Consensus       243 a~~~gv~v~~~~~~d~l~~~~~~~~~Y~~~m~~n~~~l~~aL  284 (286)
T d1psza_         243 SQDTNIPIYAQIFTDSIAEQGKEGDSYYSMMKYNLDKIAEGL  284 (286)
T ss_dssp             HHHHTCCEEEEECSSSCCCTTSTTCSHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             997399678641565667789875779999999999999986


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: "Helical backbone" metal receptor
family: TroA-like
domain: Pneumococcal surface antigen PssA
species: Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]