HHSEARCH alignment of GI: 254780537 and SCOP domain: d1toaa_

Alignment
>d1toaa_ c.92.2.2 (A:) Periplasmic zinc binding protein TroA {Treponema pallidum [TaxId: 160]}
Probab=100.00  E-value=0  Score=468.47  Aligned_cols=270  Identities=24%  Similarity=0.402  Sum_probs=250.0

Q ss_pred             CCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             88289997528999999851891489996268898012022712457760378999988761068999997423557521
Q gi|254780537|r   22 QKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKII  101 (294)
Q Consensus        22 ~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i  101 (294)
                      +||+||||++||+++|++|+||+++|++|+|+|+|||+|||+|+|+++|++||+||+||.+||+|+.+++.+...+..++
T Consensus         1 gkp~Vv~t~~pl~~~v~~I~gd~v~V~~lip~~~dPH~ye~~p~d~~~l~~ADliv~~G~~lE~~~~~~~~~~~~~~~v~   80 (277)
T d1toaa_           1 GKPLVVTTIGMIADAVKNIAQGDVHLKGLMGPGVDPHLYTATAGDVEWLGNADLILYNGLHLETKMGEVFSKLRGSRLVV   80 (277)
T ss_dssp             CCCEEEESSHHHHHHHHHHHGGGSEEEESCCTTCCTTTCCCCHHHHHHHHHCSEEEECCTTCSTTCHHHHHHHTTSSEEE
T ss_pred             CCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCCEEE
T ss_conf             99899998879999999982994589980697979827768999999995699999989986613589998647887155


Q ss_pred             CCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf             11237420222100123346301112213567899999999986431888999999899863014553378998863078
Q gi|254780537|r  102 TVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVD  181 (294)
Q Consensus       102 ~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p  181 (294)
                      ...+.....  ..++++|++.|||+|+||.|++.++++|++.|+++||+|++.|++|+++|.++|++|+.+++..++.+|
T Consensus        81 ~~~~~~~~~--~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~n~~~~~~~L~~l~~~~~~~~~~~~  158 (277)
T d1toaa_          81 AVSETIPVS--QRLSLEEAEFDPHVWFDVKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRRKAQSLP  158 (277)
T ss_dssp             EGGGGSCGG--GSCBSTTSCBCCCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             ECCCCCCCC--CCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             204444421--013545333564144074158999999999999874666789999999999999998789999987501


Q ss_pred             CCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE-
Q ss_conf             4473699826652145775297288722688640007899999997620169718998278997999999998299344-
Q gi|254780537|r  182 PEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYG-  260 (294)
Q Consensus       182 ~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~-  260 (294)
                      ..+|.++++|++|+||+++|||++.++.+.+++.+||+++++++++.||+++|+|||+|++++++.++.|+++++++.. 
T Consensus       159 ~~~~~~v~~H~a~~Yf~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~~~k~~~  238 (277)
T d1toaa_         159 AERRVLVTAHDAFGYFSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLPAIFIESSIPHKNVEALRDAVQARGHV  238 (277)
T ss_dssp             GGGCEEEEEESCCHHHHHHHTCEEEEEECSSCSSCCCHHHHHHHHHHHHHTTCSEEEEETTSCTHHHHHHHHHHHTTTCC
T ss_pred             CCCEEEEEECCCHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCEE
T ss_conf             46438999455125578734864011123344213414799999999985177089954778818999999985788413


Q ss_pred             ----EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             ----432012378777886899999999999998620
Q gi|254780537|r  261 ----GVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       261 ----~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL  293 (294)
                          +.++.|++++.+..+.+|++||++|+++|++||
T Consensus       239 ~~~~~~l~~d~l~~~~~~~~tY~~~m~~N~~~i~~aL  275 (277)
T d1toaa_         239 VQIGGELFSDAMGDAGTSEGTYVGMVTHNIDTIVAAL  275 (277)
T ss_dssp             CEEEEEECSSSCCCTTSGGGSHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             3447723544456778883659999999999999986


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: "Helical backbone" metal receptor
family: TroA-like
domain: Periplasmic zinc binding protein TroA
species: Treponema pallidum [TaxId: 160]