RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780537|ref|YP_003064950.1| periplasmic solute binding
protein [Candidatus Liberibacter asiaticus str. psy62]
(294 letters)
>gnl|CDD|29740 cd01137, PsaA, Metal binding protein PsaA. These proteins have
been shown to function as initial receptors in ABC
transport of Mn2+ and as surface adhesins in some
eubacterial species. They belong to the TroA
superfamily of periplasmic metal binding proteins that
share a distinct fold and ligand binding mechanism. A
typical TroA protein is comprised of two globular
subdomains connected by a single helix and can bind the
metal ion in the cleft between these domains. In
addition, these proteins sometimes have a low complexity
region containing a metal-binding histidine-rich motif
(repetitive HDH sequence)..
Length = 287
Score = 300 bits (770), Expect = 3e-82
Identities = 121/279 (43%), Positives = 170/279 (60%), Gaps = 1/279 (0%)
Query: 15 MSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNAD 74
S + K V+++FSI+ DI +NIA D V VT++V G D H Y+ T +D K+ AD
Sbjct: 9 SSPATAASKLKVVATFSILADIARNIAGDRVNVTSIVPPGADPHEYEPTPSDIKKLSKAD 68
Query: 75 LILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAM 134
LIL NGL+LE + N K ++ V++GI+PI + E +P+PHAWMS NA+
Sbjct: 69 LILYNGLNLEPWLERLVKNAGKDVPVVAVSEGIDPIPLEEGHYKG-KPDPHAWMSPKNAI 127
Query: 135 IYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCL 194
IY++NI KAL+ DP+NA+ Y+ NA Y K++ K + + EKR VTSEG
Sbjct: 128 IYVKNIAKALSEADPANAETYQKNAAAYKAKLKALDEWAKAKFATIPAEKRKLVTSEGAF 187
Query: 195 VYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYE 254
Y A+ +G K YLWPIN++ E +P + I Q++ K+ +F EST +D+ KQVA E
Sbjct: 188 SYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKEKVPAVFVESTVNDRLMKQVAKE 247
Query: 255 TNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293
T A GG LY DSLS+ GPA TYLD++ +L IV+ L
Sbjct: 248 TGAKIGGQLYTDSLSEKGGPADTYLDMMEHNLDTIVEGL 286
>gnl|CDD|31146 COG0803, LraI, ABC-type metal ion transport system, periplasmic
component/surface adhesin [Inorganic ion transport and
metabolism].
Length = 303
Score = 239 bits (611), Expect = 8e-64
Identities = 104/294 (35%), Positives = 157/294 (53%), Gaps = 3/294 (1%)
Query: 1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSY 60
L + L ++ + K V+++F I D+ +NIA D V V +LV G D HSY
Sbjct: 10 ALLLILLLAGCGTSAASDGDSAKLKVVTTFPPIADVVKNIAGDKVDVVSLVPPGADPHSY 69
Query: 61 QVTSADAIKIQNADLILCNGLHLEETYMKYFTNL-KKGTKIITVTDGINPIGVSEDTSVD 119
+ T +D K++ ADLI+ NGL LE K + KK +I V+DGI + + + +
Sbjct: 70 EPTPSDIAKLRKADLIVYNGLGLEPWLEKLLESADKKKVLVIEVSDGIELLPLPGE-EEE 128
Query: 120 SEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEK 179
+PH W+ NA IY ENI AL LDP N + YE NA Y +K+ K ++ K
Sbjct: 129 GVNDPHVWLDPKNAKIYAENIADALVELDPENKETYEKNAEAYLKKLNKLDEEAKAKLSK 188
Query: 180 VDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFS 239
+ P +R VTS G YLA D+G K + + I+ ++E SP + ++ ++ IK IF
Sbjct: 189 I-PAQRDVVTSHGAFGYLARDYGLKQVAIAGISPEAEPSPKDLAKLVDLIKKKNIKAIFV 247
Query: 240 ESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293
ES S + A+ +A ET G+LY+DSL D TY+ +++ +L IV+ L
Sbjct: 248 ESNVSSKSAETLAKETGVKILGLLYLDSLGDKDSKGDTYISMMKANLDTIVEGL 301
>gnl|CDD|144773 pfam01297, SBP_bac_9, Periplasmic solute binding protein family.
This family includes periplasmic solute binding proteins
such as TroA that interacts with an ATP-binding cassette
transport system in Treponema pallidum.
Length = 272
Score = 209 bits (533), Expect = 9e-55
Identities = 84/276 (30%), Positives = 135/276 (48%), Gaps = 13/276 (4%)
Query: 26 VLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEE 85
V++S + D+ + I D V VT+LV G D H+Y+ T +D K+ ADL++ NG LE
Sbjct: 1 VVASIPPLADLVKAIGGDKVEVTSLVPPGADPHTYEPTPSDIKKLAKADLVVYNGAGLEP 60
Query: 86 TYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVD--------SEPNPHAWMSLTNAMIYI 137
K +L K++ +++GI + +PH W+ NA
Sbjct: 61 WLDKLLASLANKVKVVDLSEGIELLDAPGHEHDHDEHDHDDHGHGDPHIWLDPKNAKAMA 120
Query: 138 ENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYL 197
E I AL+ LDP NA YE NA + +K+ +K ++ + P KR +T Y
Sbjct: 121 EAIADALSELDPENAATYEKNAAAFLKKLDELDAEIKAKLAPI-PGKR-VITFHDAFGYF 178
Query: 198 AEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNA 257
A+ +G + + + + +SE SP+ + I ++ H +K IF E S + A+ +A ET A
Sbjct: 179 AKAYGLEQIAILGESPESEPSPADLAELIKLIKEHNVKVIFVEPQFSPKLAETLAEETGA 238
Query: 258 SYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293
LY+D L G TYL+L+R +L + + L
Sbjct: 239 K-VVPLYLDPLGSEGG--DTYLELMRHNLDTLAEAL 271
>gnl|CDD|29736 cd01017, AdcA, Metal binding protein AcdA. These proteins have
been shown to function in the ABC uptake of Zn2+ and
Mn2+ and in competence for genetic transformation and
adhesion. The AcdA proteins belong to the TroA
superfamily of helical backbone metal receptor proteins
that share a distinct fold and ligand binding mechanism.
They are comprised of two globular subdomains connected
by a long alpha helix and they bind their ligand in the
cleft between these domains. In addition, many of these
proteins have a low complexity region containing metal
binding histidine-rich motif (repetitive HDH sequence)..
Length = 282
Score = 151 bits (382), Expect = 2e-37
Identities = 72/283 (25%), Positives = 137/283 (48%), Gaps = 12/283 (4%)
Query: 21 TQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNG 80
+ K V+++F + + T+ I D V ++ AG + H ++ + D +I +AD+ + NG
Sbjct: 1 SGKLKVVTTFYPLYEFTKAIGGDKADVKLIIPAGTEPHDFEPSPKDIARIADADVFVYNG 60
Query: 81 LHLEETYMKYFTNLK-KGTKIITVTDGINPIGVSE--------DTSVDSEPNPHAWMSLT 131
L +E K +L+ K K++ + GI + + + +PH W+S
Sbjct: 61 LGMETWAEKVLKSLQNKKLKVVEASKGIKLLKAGGAEHDHDHSHSHHHGDYDPHVWLSPV 120
Query: 132 NAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSE 191
A+ +ENI+ AL LDP N + YE NA Y++K+ + ++ K + + FVT
Sbjct: 121 LAIQQVENIKDALIKLDPDNKEYYEKNAAAYAKKLEALDQEYRAKLAKA--KGKTFVTQH 178
Query: 192 GCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV 251
YLA +G K + + ++ + E SP + + ++ +K+IF E S + A+ +
Sbjct: 179 AAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVKYIFFEENASSKIAETL 238
Query: 252 AYETNASYGGVLYVDSLSKPDGPAP-TYLDLLRFSLTKIVDTL 293
A ET A + +++L+K + Y L++ +L + L
Sbjct: 239 AKETGAKLLVLNPLETLTKEEIDDGKDYFSLMKENLETLKRAL 281
>gnl|CDD|29735 cd01016, TroA, Metal binding protein TroA. These proteins have been
shown to function as initial receptors in ABC transport
of Zn2+ and possibly Fe3+ in many eubacterial species.
The TroA proteins belong to the TroA superfamily of
periplasmic metal binding proteins that share a distinct
fold and ligand binding mechanism. A typical TroA
protein is comprised of two globular subdomains
connected by a single helix and can bind the metal ion
in the cleft between these domains. In addition, these
proteins sometimes have a low complexity region
containing a metal-binding histidine-rich motif
(repetitive HDH sequence)..
Length = 276
Score = 134 bits (339), Expect = 3e-32
Identities = 71/276 (25%), Positives = 133/276 (48%), Gaps = 6/276 (2%)
Query: 23 KKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLH 82
K V+++ +I D +NI D V VT L+ G D H Y+ T+ D K+QNAD++ NGLH
Sbjct: 1 KPNVVTTTGMIADAVENIGGDHVEVTGLMGPGVDPHLYKATAGDVEKLQNADVVFYNGLH 60
Query: 83 LEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRK 142
LE + L +I + D ++ + D + +PH W + ++ + +
Sbjct: 61 LEGKMSDVLSKLGSSKSVIALEDTLDRSQLILDEE-EGTYDPHIWFDVKLWKYAVKAVAE 119
Query: 143 ALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFG 202
L+ P + +++ N+ Y E++ + K +I ++ ++R VT+ Y +G
Sbjct: 120 VLSEKLPEHKDEFQANSEAYVEELDSLDAYAKKKIAEIPEQQRVLVTAHDAFGYFGRAYG 179
Query: 203 FKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV-----AYETNA 257
F+ L I++DSE + ++ + KIK IF ES+ + + + + A +
Sbjct: 180 FEVKGLQGISTDSEAGLRDINELVDLIVERKIKAIFVESSVNQKSIEALQDAVKARGHDV 239
Query: 258 SYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293
GG LY D++ + TY+ + + ++ IV+ L
Sbjct: 240 QIGGELYSDAMGEEGTSEGTYIGMFKHNVDTIVEAL 275
>gnl|CDD|29737 cd01018, ZntC, Metal binding protein ZntC. These proteins are
predicted to function as initial receptors in ABC
transport of metal ions. They belong to the TroA
superfamily of helical backbone metal receptor proteins
that share a distinct fold and ligand binding mechanism.
They are comprised of two globular subdomains connected
by a long alpha helix and bind their specific ligands in
the cleft between these domains. In addition, many of
these proteins possess a metal-binding histidine-rich
motif (repetitive HDH sequence)..
Length = 266
Score = 108 bits (271), Expect = 2e-24
Identities = 64/244 (26%), Positives = 111/244 (45%), Gaps = 18/244 (7%)
Query: 37 TQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKK 96
+ IA D V V LV G++ H+Y+ K+ ADL GL EE +++ F +
Sbjct: 16 VEKIAGDTVDVVVLVPPGSNPHTYEPKPQQMKKLSEADLYFRIGLGFEEVWLERFRSNNP 75
Query: 97 GTKIITVTDGINPIGVS----EDTSVDSEP-----NPHAWMSLTNAMIYIENIRKALTAL 147
+++ ++ GI I ++ +PH W+S NA I ENI +AL L
Sbjct: 76 KMQVVNMSKGITLIPMADHHHHHHGEHEHHHHGNYDPHIWLSPANAKIMAENIYEALAEL 135
Query: 148 DPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLY 207
DP NA Y+ N ++ ++T + K+ +R F+ Y A D+G +
Sbjct: 136 DPQNATYYQANLDALLAELDALDSEIRTILSKLK--QRAFMVYHPAWGYFARDYGLTQI- 192
Query: 208 LWPINSD-SERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVD 266
PI + E SP+ ++ I+ + ++ +F + S + A+ +A E A V+ +D
Sbjct: 193 --PIEEEGKEPSPADLKRLIDLAKEKGVRVVFVQPQFSTKSAEAIAREIGA---KVVTID 247
Query: 267 SLSK 270
L+
Sbjct: 248 PLAA 251
>gnl|CDD|29738 cd01019, ZnuA, Zinc binding protein ZnuA. These proteins have been
shown to function as initial receptors in the ABC uptake
of Zn2+. They belong to the TroA superfamily of
periplasmic metal binding proteins that share a distinct
fold and ligand binding mechanism. They are comprised
of two globular subdomains connected by a single helix
and bind their specific ligands in the cleft between
these domains. A typical TroA protein is comprised of
two globular subdomains connected by a single helix and
can bind the metal ion in the cleft between these
domains. In addition, these proteins sometimes have a
low complexity region containing a metal-binding
histidine-rich motif (repetitive HDH sequence)..
Length = 286
Score = 106 bits (266), Expect = 7e-24
Identities = 62/279 (22%), Positives = 113/279 (40%), Gaps = 29/279 (10%)
Query: 26 VLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEE 85
VL+S +G I I + V LV G H Y++ +DA K+Q ADL++ G LE
Sbjct: 6 VLTSIKPLGFIAAAIMGGVGEVEVLVPPGASPHDYELRPSDARKLQEADLVVWIGPDLEA 65
Query: 86 TYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEP------------------NPHAW 127
++ +K K++T+ I+ + + S +PH W
Sbjct: 66 -FLDKVLQGRKKGKVLTLAKLIDLKTLEDGASHGDHEHDHEHAHGEHDGHEEGGLDPHLW 124
Query: 128 MSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRI-EKVDP-EKR 185
+S NA + + + L+ALDP NA Y N ++ + + L I E++ P + +
Sbjct: 125 LSPENAAEVAQAVAEKLSALDPDNAATYAANLEAFNAR----LAELDATIKERLAPVKTK 180
Query: 186 WFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSD 245
F Y + +G ++ I+ + + + +++ +F+E
Sbjct: 181 PFFVFHDAYGYFEKRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKGATCVFAEPQFHP 240
Query: 246 QPAKQVAYETNASYGGVLYVDSLSKPDGPAPT-YLDLLR 283
+ A+ +A T A G +D L Y++ LR
Sbjct: 241 KIAETLAEGTGAKVG---ELDPLGGLIELGKNSYVNFLR 276
>gnl|CDD|29739 cd01020, TroA_b, Metal binding protein TroA_b. These proteins are
predicted to function as initial receptors in ABC
transport of metal ions. They belong to the TroA
superfamily of helical backbone metal receptor proteins
that share a distinct fold and ligand binding mechanism.
A typical TroA protein is comprised of two globular
subdomains connected by a single helix and can bind the
metal ion in the cleft between these domains. In
addition, these proteins sometimes have a low complexity
region containing a metal-binding histidine-rich motif
(repetitive HDH sequence)..
Length = 264
Score = 87.3 bits (216), Expect = 4e-18
Identities = 56/238 (23%), Positives = 98/238 (41%), Gaps = 22/238 (9%)
Query: 22 QKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGN-DSHSYQVTSADAIKIQNADLILCNG 80
K V++S + G + + + D V VT+++ + D H ++ T DA K+ AD+++ NG
Sbjct: 1 GKINVVASTNFWGSVAEAVGGDHVEVTSIITNPDVDPHDFEPTPTDAAKVSTADIVVYNG 60
Query: 81 LHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEP-NPHAWMSLTNAMIYIEN 139
Y + T L TK + V I D D E NPH W
Sbjct: 61 G----GYDPWMTKLLADTKDVIV------IAADLDGHDDKEGDNPHLWYDPETMSKVANA 110
Query: 140 IRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKV--DPEKRWFVTSEGCLVYL 197
+ AL DP N K Y+ NA+++ ++ PL +I ++ + +E YL
Sbjct: 111 LADALVKADPDNKKYYQANAKKFVASLK----PLAAKIAELSAKYKGAPVAATEPVFDYL 166
Query: 198 AEDFGFK----SLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV 251
+ G K Y S++E SP+ + N +++ +I + + +
Sbjct: 167 LDALGMKERTPKGYTATTESETEPSPADIAAFQNAIKNRQIDALIVNPQQASSATTNI 224
>gnl|CDD|29748 cd01145, TroA_c, Periplasmic binding protein TroA_c. These
proteins are predicted to function as initial receptors
in the ABC metal ion uptake in eubacteria and archaea.
They belong to the TroA superfamily of helical backbone
metal receptor proteins that share a distinct fold and
ligand binding mechanism. A typical TroA protein is
comprised of two globular subdomains connected by a
single helix and can bind their ligands in the cleft
between these domains..
Length = 203
Score = 81.6 bits (201), Expect = 2e-16
Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 6/160 (3%)
Query: 23 KKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLH 82
V+ +F + D+ + +A D V V+ L G D H YQ+ +D K++ ADL++ +G
Sbjct: 2 ALNVVVTFPDLKDLVREVAGDAVIVSALTPPGVDPHQYQLKPSDIAKMRKADLVVTSGHE 61
Query: 83 LEETYMKYFTNLKK-----GTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYI 137
LE K G KI+ + + NPH W+ NA
Sbjct: 62 LEGFEPKLAELSSNSKVQPGIKILIEDSDTVGMVDRAMGDYHGKGNPHVWLDPNNAPALA 121
Query: 138 ENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRI 177
+ + AL LDPS ++Y+ N R + K+ N +L R
Sbjct: 122 KALADALIELDPSEQEEYKENLRVFLAKL-NKLLREWERQ 160
>gnl|CDD|34180 COG4531, ZnuA, ABC-type Zn2+ transport system, periplasmic
component/surface adhesin [Inorganic ion transport and
metabolism].
Length = 318
Score = 77.7 bits (191), Expect = 4e-15
Identities = 69/296 (23%), Positives = 115/296 (38%), Gaps = 48/296 (16%)
Query: 1 MLRYFICLL--FSYIPMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSH 58
ML LL + + ++ V++S +G I IA + L+ G H
Sbjct: 2 MLHKKTLLLSALFALLLGSAPAAAAAAVVTSIKPLGFIASAIADGVGEPEVLLPGGASPH 61
Query: 59 SYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTD--GINPIGVSEDT 116
Y + +D ++Q+ADL++ G LE K + L G K++T+ D G+ P+ E
Sbjct: 62 DYSLRPSDVKRLQSADLVVWVGPDLEAFLDKPLSGLP-GAKVVTLADLPGVKPLLFREAH 120
Query: 117 SVDSEP-----------------------NPHAWMSLTNAMIYIENIRKALTALDPSNAK 153
+ E + H W+S A I K L LDP NA
Sbjct: 121 DHEEEHDHGHDHAGADHKGDHDHHHEGEYDMHLWLSPAIAKAVAAAIAKKLAELDPQNAA 180
Query: 154 KYELNAREY-------SEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSL 206
KY+ N +++ +K+ + P+K K +FV + Y +G K L
Sbjct: 181 KYDANLKDFEAQLAALDKKVGEELAPVK--------GKPFFVFHDA-YGYFENAYGLKPL 231
Query: 207 YLWPINSDSERSPSMMR-HAIN-QMRSHKIKFIFSESTNSDQPAKQVAYETNASYG 260
+ ++ E P R I Q++ K +F+E + + VA T+ G
Sbjct: 232 GHFTVS--PEVQPGAKRLAEIRTQLKEQKATCVFAEPQFRPKVVETVAEGTSVRSG 285
>gnl|CDD|29734 cd00636, TroA-like, Helical backbone metal receptor (TroA-like
domain). These proteins have been shown to function in
the ABC transport of ferric siderophores and metal ions
such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand
binding site is formed in the interface between two
globular domains linked by a single helix. Many of
these proteins also possess a low complexity region
containing a metal-binding histidine-rich motif
(repetitive HDH sequence). The TroA-like proteins
differ in their fold and ligand-binding mechanism from
the PBPI and PBPII proteins, but are structurally
similar, however, to the beta-subunit of the nitrogenase
molybdenum-iron protein MoFe. Most TroA-like proteins
are encoded by ABC-type operons and appear to function
as periplasmic components of ABC transporters in metal
ion uptake..
Length = 148
Score = 42.2 bits (98), Expect = 2e-04
Identities = 34/180 (18%), Positives = 56/180 (31%), Gaps = 45/180 (25%)
Query: 24 KVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDS-------------HSYQVTSADAIKI 70
K V++ ++ + D V +G H Y+ + + I
Sbjct: 1 KRVVALDPGATELLLALGGDDKPVGVADPSGYPPEAKALLEKVPDVGHGYEP-NLEKIAA 59
Query: 71 QNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSL 130
DLI+ NG LE K K ++ V + +SL
Sbjct: 60 LKPDLIIANGSGLEAWLDKL---SKIAIPVVVVDEASE-------------------LSL 97
Query: 131 TNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTS 190
N I I KAL E NA E ++ + L+ ++ K+ +K V
Sbjct: 98 ENIKESIRLIGKALG---------KEENAEELIAELDARLAELRAKLAKIPKKKVSLVVG 148
>gnl|CDD|32005 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase
[Carbohydrate transport and metabolism].
Length = 380
Score = 30.6 bits (69), Expect = 0.57
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 76 ILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDT 116
I+ +G+H+ ++ K G KI+ VTD + G+ +
Sbjct: 243 IIADGVHVHPAAIRLALKAKGGDKIVLVTDAMAAAGLPDGE 283
>gnl|CDD|32830 COG3013, COG3013, Uncharacterized conserved protein [Function
unknown].
Length = 168
Score = 29.5 bits (66), Expect = 1.1
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 127 WMSLTNAM-IYIENIRKALTALDPSNAKKYE 156
WM +TNA + + N K +T LDP NA++Y
Sbjct: 4 WMEMTNAQRLILSNQYKMMTMLDPENAERYR 34
>gnl|CDD|36399 KOG1185, KOG1185, KOG1185, Thiamine pyrophosphate-requiring enzyme
[Amino acid transport and metabolism, Coenzyme transport
and metabolism].
Length = 571
Score = 28.7 bits (64), Expect = 1.9
Identities = 29/155 (18%), Positives = 58/155 (37%), Gaps = 28/155 (18%)
Query: 56 DSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYF---TNLKKGTKIITVTDGINPIGV 112
D+H V+SA ++ ++ AD++L G L ++ +F K K I V +
Sbjct: 260 DNHPLNVSSARSLALKKADVVLLAGARLN--WILHFGLPPKWSKDVKFIQVD-------I 310
Query: 113 SEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTA----LDPSN------AKKYELNAREY 162
+ + ++ P + + +++ + + L PS +K + N
Sbjct: 311 NPEELGNNFVKPDVAI-QGDIGLFVLQLVEELQDQPWTWGPSTDWVKELREKDKQNEAAV 369
Query: 163 SEKIRNSILPLK-----TRIEKVDPEKRWFVTSEG 192
EK PL + ++ P + SEG
Sbjct: 370 EEKAAKKSTPLNYYQVLQTVRELLPNDDTILVSEG 404
>gnl|CDD|176330 cd01254, PH_PLD, Phospholipase D (PLD) pleckstrin homology (PH)
domain. Phospholipase D (PLD) pleckstrin homology (PH)
domain. PLD hydrolyzes phosphatidylcholine to
phosphatidic acid (PtdOH), which can bind target
proteins. PLD contains a PH domain, a PX domain and four
conserved PLD signature domains. The PLD PH domain is
specific for bisphosphorylated inositides. PH domains
share little sequence conservation, but all have a
common fold, which is electrostatically polarized. PH
domains also have diverse functions. They are often
involved in targeting proteins to the plasma membrane,
but few display strong specificity in lipid binding.
Any specificity is usually determined by loop regions or
insertions in the N-terminus of the domain, which are
not conserved across all PH domains.
Length = 121
Score = 28.2 bits (63), Expect = 2.4
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 184 KRWFVTSEGCLVYLAEDFGFK 204
KRWF+ E L Y+ + +
Sbjct: 35 KRWFIVKESFLAYMDDPSSAQ 55
>gnl|CDD|30034 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA,
catalyzes the hydrolysis of the N-acetyl group of
N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to
glucosamine 6-phosphate and acetate. This is the first
committed step in the biosynthetic pathway to
amino-sugar-nucleotides, which is needed for cell wall
peptidoglycan and teichoic acid biosynthesis.
Deacetylation of N-acetylglucosamine is also important
in lipopolysaccharide synthesis and cell wall
recycling..
Length = 374
Score = 27.9 bits (62), Expect = 3.2
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 76 ILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSE 114
++ +G+H+ ++ K KI+ VTD + G+ +
Sbjct: 242 LIADGIHVHPAAVRLAYRAKGADKIVLVTDAMAAAGLPD 280
>gnl|CDD|146493 pfam03887, YfbU, YfbU domain. This presumed domain is about 160
residues long. It is found in archaebacteria and
eubacteria. In In Corynebacterium glutamicum Ycg4L it is
associated with a helix-turn-helix domain. This suggests
that this may be a ligand binding domain.
Length = 166
Score = 27.9 bits (62), Expect = 3.9
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 128 MSLTNAMIYI-ENIRKALTALDPSNAKKYE 156
M +TNA I N K + ALDP NAKKY
Sbjct: 1 MEMTNAQRLILSNQYKLMLALDPYNAKKYR 30
>gnl|CDD|31484 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 27.6 bits (61), Expect = 4.2
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 137 IENIRKALTALDPSNAKKYELNAREYSEKIRNSILP-LKTRIEKVD--PEKRWFVTSEGC 193
I A TAL+ + KK RE E I +L K + +K + + RWFV+S+G
Sbjct: 393 IAYYESAKTALEKAEGKKAIEEIRE--ELIEEGLLKSKKKKRKKKEWFEKFRWFVSSDGF 450
Query: 194 LVYLAED 200
LV +
Sbjct: 451 LVIGGRN 457
>gnl|CDD|176328 cd01252, PH_cytohesin, Cytohesin Pleckstrin homology (PH) domain.
Cytohesin Pleckstrin homology (PH) domain. Cytohesin is
an ARF-Guanine nucleotide Exchange Factor (GEF), which
has a Sec7-type Arf-GEFdomain and a pleckstrin homology
domain. It specifically binds
phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,
5)P3) via its PH domain and it acts as a PI 3-kinase
effector mediating biological responses such as cell
adhesion and membrane trafficking. PH domains are only
found in eukaryotes. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. PH domains also have
diverse functions. They are often involved in targeting
proteins to the plasma membrane, but few display strong
specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains.
Length = 125
Score = 26.7 bits (59), Expect = 7.6
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 183 EKRWFVTSEGCLVY 196
++RWF+ ++ CL Y
Sbjct: 17 KRRWFILTDNCLYY 30
>gnl|CDD|34155 COG4477, EzrA, Negative regulator of septation ring formation [Cell
division and chromosome partitioning].
Length = 570
Score = 26.8 bits (59), Expect = 8.5
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 137 IENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEK 179
E +++ LT+L +K EL ARE E++++ + +K +EK
Sbjct: 398 QEKVQEHLTSL-----RKDELEARENLERLKSKLHEIKRYMEK 435
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.317 0.132 0.377
Gapped
Lambda K H
0.267 0.0631 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,349,616
Number of extensions: 166804
Number of successful extensions: 444
Number of sequences better than 10.0: 1
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 22
Length of query: 294
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 201
Effective length of database: 4,254,100
Effective search space: 855074100
Effective search space used: 855074100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)