RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter asiaticus str. psy62] (294 letters) >3hh8_A Metal ABC transporter substrate-binding lipoprotein; metal binding, cell membrane, copper, copper transport, ION transport; 1.87A {Streptococcus pyogenes serotype M1} PDB: 1psz_A Length = 294 Score = 211 bits (537), Expect = 2e-55 Identities = 91/284 (32%), Positives = 155/284 (54%), Gaps = 7/284 (2%) Query: 16 SASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADL 75 + +A + K V+++ SII D+T+ IA D + + ++V G D H Y+ DA K NAD+ Sbjct: 10 AKTAKSDKLKVVATNSIIADMTKAIAGDKIDLHSIVPIGQDPHEYEPLPEDAEKTSNADV 69 Query: 76 ILCNGLHLEETYMKYFTNL------KKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMS 129 I NG++LE+ +FT L K V+DGI+ I + S + +PHAW++ Sbjct: 70 IFYNGINLEDGGQAWFTKLVKNAQKTKNKDYFAVSDGIDVIYLEGA-SEKGKEDPHAWLN 128 Query: 130 LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVT 189 L N +IY +NI K L A DP N + YE N + Y K+ K++ + + K+ VT Sbjct: 129 LENGIIYSKNIAKQLIAKDPKNKETYEKNLKAYVAKLEKLDKEAKSKFDAIAENKKLIVT 188 Query: 190 SEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAK 249 SEGC Y ++ +G S Y+W IN++ E +P + I +++ K +F ES+ +P + Sbjct: 189 SEGCFKYFSKAYGVPSAYIWEINTEEEGTPDQISSLIEKLKVIKPSALFVESSVDRRPME 248 Query: 250 QVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 V+ ++ ++ DS++K P +Y +++++L KI + L Sbjct: 249 TVSKDSGIPIYSEIFTDSIAKKGKPGDSYYAMMKWNLDKISEGL 292 >1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2 Length = 321 Score = 201 bits (511), Expect = 2e-52 Identities = 114/277 (41%), Positives = 177/277 (63%), Gaps = 2/277 (0%) Query: 17 ASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLI 76 T +KK VL++F+++ D+ QN+A D + V ++ G + H Y+ T +D +K Q+ADLI Sbjct: 39 QGETEEKKKVLTTFTVLADMVQNVAGDKLVVESITRIGAEIHGYEPTPSDIVKAQDADLI 98 Query: 77 LCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIY 136 L NG++LE + ++ N+K + +T+GI PI +++ +PNPHAWMS NA++Y Sbjct: 99 LYNGMNLERWFEQFLGNVKD-VPSVVLTEGIEPIPIADG-PYTDKPNPHAWMSPRNALVY 156 Query: 137 IENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVY 196 +ENIR+A LDP NAK Y NA YSE+++ L +E+V +R+ V+ EG Y Sbjct: 157 VENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSY 216 Query: 197 LAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETN 256 LA D+G + +Y+WPIN++ + +P ++ I +++++ + IF EST SD+ KQVA T Sbjct: 217 LARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSDKGQKQVAQATG 276 Query: 257 ASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 A +GG LYVDSLS +GP PT+LDLL + I + L Sbjct: 277 ARFGGNLYVDSLSTEEGPVPTFLDLLEYDARVITNGL 313 >3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A Length = 286 Score = 187 bits (475), Expect = 3e-48 Identities = 72/287 (25%), Positives = 124/287 (43%), Gaps = 15/287 (5%) Query: 16 SASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADL 75 + TQ V++SF + +T+ ++ DL V ++++G HS++ + D I +ADL Sbjct: 5 NPKQPTQGMSVVTSFYPMYAMTKEVSGDLNDVR-MIQSGAGIHSFEPSVNDVAAIYDADL 63 Query: 76 ILCNGLHLEETYMKYFTNLKKGTKII---------TVTDGINPIGVSEDTSVDSEPNPHA 126 + + LE NLKK + G+ + V++ + +PH Sbjct: 64 FVYHSHTLEAWARDLDPNLKKSKVDVFEASKPLTLDRVKGLEDMEVTQGIDPATLYDPHT 123 Query: 127 WMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRW 186 W A NI K L LDP + Y NA+ + ++ + +KV + Sbjct: 124 WTDPVLAGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKEAEQLTEEYTQKFKKVR--SKT 181 Query: 187 FVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQ 246 FVT YLA+ FG K L + I+ + E SP ++ + ++ + +K IF+E + + Sbjct: 182 FVTQHTAFSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNPK 241 Query: 247 PAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 A +A T A V + L TYL+ LR +L + L Sbjct: 242 IAHAIAKSTGAK---VKTLSPLEAAPSGNKTYLENLRANLEVLYQQL 285 >1pq4_A Periplasmic binding protein component of AN ABC type zinc uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A Length = 291 Score = 182 bits (462), Expect = 9e-47 Identities = 60/297 (20%), Positives = 106/297 (35%), Gaps = 42/297 (14%) Query: 26 VLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEE 85 + S + I DLV V+ LV ND H+Y+ + A+ + GL E+ Sbjct: 5 ITVSIPPQQYFLEKIGGDLVRVSVLVPGNNDPHTYEPKPQQLAALSEAEAYVLIGLGFEQ 64 Query: 86 TYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSE------------------------ 121 +++ K+I GI P+ + + E Sbjct: 65 PWLEKLKAANANMKLIDSAQGITPLEMEKHDHSHGEEEGHDDHSHDGHDHGSESEKEKAK 124 Query: 122 -----PNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTR 176 +PH W+S T I K L LDP N +YE N + ++ L Sbjct: 125 GALMVADPHIWLSPTLVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELGQI 184 Query: 177 IEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKF 236 ++ + +R F+ Y A D+ + + E S ++ I+ + + + Sbjct: 185 LQPLP--QRKFIVFHPSWAYFARDYNLVQIPIEV--EGQEPSAQELKQLIDTAKENNLTM 240 Query: 237 IFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 +F E+ S + ++ +A E A GV +D L A + L+ KI + Sbjct: 241 VFGETQFSTKSSEAIAAEIGA---GVELLDPL------AADWSSNLKAVAQKIANAN 288 >1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A Length = 313 Score = 179 bits (454), Expect = 8e-46 Identities = 71/295 (24%), Positives = 137/295 (46%), Gaps = 8/295 (2%) Query: 4 YFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVT 63 YF + S+ A+A K +V+++ +I D +NIA+ V + L+ G D H Y T Sbjct: 20 YFQGAMGSFGSKDAAAD-GKPLVVTTIGMIADAVKNIAQGDVHLKGLMGPGVDPHLYTAT 78 Query: 64 SADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPN 123 + D + NADLIL NGLHLE + F+ L+ ++ V++ I + ++E + Sbjct: 79 AGDVEWLGNADLILYNGLHLETKMGEVFSKLRGSRLVVAVSETIPVS--QRLSLEEAEFD 136 Query: 124 PHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPE 183 PH W + ++ + ++L L P +++ + Y +++ ++ + + + E Sbjct: 137 PHVWFDVKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRRKAQSLPAE 196 Query: 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTN 243 +R VT+ Y + +GF+ L +++ SE S M+ + K+ IF ES+ Sbjct: 197 RRVLVTAHDAFGYFSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLPAIFIESSI 256 Query: 244 SDQPAKQVAYETNA-----SYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 + + + A GG L+ D++ TY+ ++ ++ IV L Sbjct: 257 PHKNVEALRDAVQARGHVVQIGGELFSDAMGDAGTSEGTYVGMVTHNIDTIVAAL 311 >2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis} Length = 312 Score = 172 bits (435), Expect = 1e-43 Identities = 72/289 (24%), Positives = 138/289 (47%), Gaps = 13/289 (4%) Query: 16 SASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADL 75 SA + K V+++F + + T+ I KD V L+ + + H ++ T D IQ+ADL Sbjct: 14 SADSKGDKLHVVTTFYPMYEFTKQIVKDKGDVDLLIPSSVEPHDWEPTPKDIANIQDADL 73 Query: 76 ILCNGLHLEETYMKYFTNLKKGTKI-ITVTDGINPIGVSE---------DTSVDSEPNPH 125 + N ++E ++ +G + + + GI+ + SE + +PH Sbjct: 74 FVYNSEYMETWVPSAEKSMGQGHAVFVNASKGIDLMEGSEEEHEEHDHGEHEHSHAMDPH 133 Query: 126 AWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKR 185 W+S A ++NI + DP N + YE N++EY K+++ +T +K + K+ Sbjct: 134 VWLSPVLAQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKLYRTTAKKAE--KK 191 Query: 186 WFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSD 245 F+T YLA+++G K + + ++ D E S + + + H +K I+ E S Sbjct: 192 EFITQHTAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIASS 251 Query: 246 QPAKQVAYETNASYGGVLYVDSLSKPDGPAP-TYLDLLRFSLTKIVDTL 293 + A +A E A + ++ LSK + Y+D+++ +L + D+L Sbjct: 252 KVADTLASEIGAKTEVLNTLEGLSKEEQDKGLGYIDIMKQNLDALKDSL 300 >3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae} Length = 284 Score = 158 bits (400), Expect = 1e-39 Identities = 63/285 (22%), Positives = 127/285 (44%), Gaps = 15/285 (5%) Query: 18 SATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLIL 77 S T + +++SF I + + ++ DL V ++++ + HS++ ++ D I +AD+ + Sbjct: 5 SQTGKGMKIVTSFYPIYAMVKEVSGDLNDVR-MIQSSSGIHSFEPSANDIAAIYDADVFV 63 Query: 78 CNGLHLEETYMKYFTNLKKG---------TKIITVTDGINPIGVSEDTSVDSEPNPHAWM 128 + LE NLKK + G+ + + + +PH W+ Sbjct: 64 YHSHTLESWAGSLDPNLKKSKVKVLEASEGMTLERVPGLEDVEAGDGVDEKTLYDPHTWL 123 Query: 129 SLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFV 188 A + I L+ +D + + Y+ NA+ + +K + + + EK + FV Sbjct: 124 DPEKAGEEAQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTKKFQPKFEKATQ--KTFV 181 Query: 189 TSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPA 248 T YLA+ FG L + I+ + E SP + ++++K+K IF+ES S + A Sbjct: 182 TQHTAFSYLAKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKTIFTESNASSKVA 241 Query: 249 KQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 + + T G+ ++ L TYL+ L +++ + + L Sbjct: 242 ETLVKSTGV---GLKTLNPLESDPQNDKTYLENLEENMSILAEEL 283 >2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A Length = 284 Score = 155 bits (392), Expect = 1e-38 Identities = 50/285 (17%), Positives = 101/285 (35%), Gaps = 22/285 (7%) Query: 26 VLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEE 85 V++S +G I IA + L+ G H Y + +D ++QNADL++ G +E Sbjct: 2 VVASLKPVGFIASAIADGVTETEVLLPDGASEHDYSLRPSDVKRLQNADLVVWVGPEMEA 61 Query: 86 TYMKYFTNLKKGTKIIT-VTDGINPIGVSE---------------DTSVDSEPNPHAWMS 129 K + L ++ + + P+ + + + N H W+S Sbjct: 62 FMQKPVSKLPGAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMHLWLS 121 Query: 130 LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVT 189 A I L L P + K + N +++ + + + + E + + + Sbjct: 122 PEIARATAVAIHGKLVELMPQSRAKLDANLKDF--EAQLASTETQVGNELAPLKGKGYFV 179 Query: 190 SEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAK 249 Y + FG L + +N + + + Q+ K +F+E + Sbjct: 180 FHDAYGYFEKQFGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVE 239 Query: 250 QVAYETNASYGGVLYVDSL-SKPDGPAPTYLDLLRFSLTKIVDTL 293 VA T+ + +D L + +Y + L + L Sbjct: 240 SVARGTSVR---MGTLDPLGTNIKLGKTSYSEFLSQLANQYASCL 281 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 44.9 bits (106), Expect = 2e-05 Identities = 62/357 (17%), Positives = 98/357 (27%), Gaps = 175/357 (49%) Query: 26 VLS---SFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCN--G 80 +LS S +IG + Q L H Y VT G Sbjct: 231 LLSIPISCPLIG-VIQ-----------LA------H-YVVT--------------AKLLG 257 Query: 81 LHLEETYMKYFTNLKKGTK-----IITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMI 135 E + KG ++T ++ DS W S Sbjct: 258 FTPGE-----LRSYLKGATGHSQGLVTAV------AIA---ETDS------WES------ 291 Query: 136 YIENIRKAL----------------TALDPSNAKKYELNAREYSE-------KIRNSILP 172 + ++RKA+ T+L PS + ++ E +E I N L Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE----DSLENNEGVPSPMLSISN--LT 345 Query: 173 ---LKTRIEKVD---PEKRWFVTSEGCLVYLAEDF---G-FKSLY---LW------PINS 213 ++ + K + P + S LV A++ G +SLY L P Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEIS---LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402 Query: 214 D------SERSPSM-MR--------HA----------INQMRSHKIKFIFSESTNSDQPA 248 D SER R H+ + + + F A Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF----------NA 452 Query: 249 KQVA---YETN-----ASYGGVLYVDSL-----SKP-DGPAPTYLDLLRFSLTKIVD 291 K + Y+T G + + + P T +F T I+D Sbjct: 453 KDIQIPVYDTFDGSDLRVLSGSI-SERIVDCIIRLPVKWETTT-----QFKATHILD 503 Score = 26.8 bits (59), Expect = 6.6 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 15/70 (21%) Query: 224 HAINQMRSHKIKFI--FSESTNS----DQPAKQVAYETNASYGGVLYVDSLSKPDGPAPT 277 A +Q++ +F E T D+P E + G YV SL +P Sbjct: 29 IA-SQLQE---QFNKILPEPTEGFAADDEPTTPA--ELVGKFLG--YVSSLVEPSKVG-Q 79 Query: 278 YLDLLRFSLT 287 + +L LT Sbjct: 80 FDQVLNLCLT 89 >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Length = 590 Score = 32.1 bits (72), Expect = 0.15 Identities = 16/137 (11%), Positives = 46/137 (33%), Gaps = 7/137 (5%) Query: 70 IQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMS 129 ++++DL+L G+ ++ KI+ + I+ + ++ + ++ Sbjct: 276 VEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHID--IDSAEIGKNKTPHVSVCGDVKLA 333 Query: 130 LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLK-----TRIEKVDPEK 184 L +EN + L + + +++ + + ++++ K Sbjct: 334 LQGMNKVLENRAEELKLDFGVWRNELNVQKQKFPLSFKTFGEAIPPQYAIKVLDELTDGK 393 Query: 185 RWFVTSEGCLVYLAEDF 201 T G A F Sbjct: 394 AIISTGVGQHQMWAAQF 410 >1nw3_A Histone methyltransferase DOT1L; HDOT1, histone lysine methyltransferase,; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.31 Length = 416 Score = 31.2 bits (70), Expect = 0.26 Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 4/41 (9%) Query: 69 KIQNADLILCNGLHLEETYMKYFTN----LKKGTKIITVTD 105 +I N +I N +K+G +I++ Sbjct: 231 RIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKP 271 >3ey5_A Acetyltransferase-like, GNAT family; structural genomics, APC60148, PSI-2, protein structure initiative; 2.15A {Bacteroides thetaiotaomicron} Length = 181 Score = 30.5 bits (68), Expect = 0.47 Identities = 13/125 (10%), Positives = 39/125 (31%), Gaps = 11/125 (8%) Query: 131 TNAMIYIENIRKALTALDPSNAKK-YELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVT 189 +NAMI + I + D + K EL + + + L+ +++ + Sbjct: 1 SNAMIRFQPITTS----DVQHYKFMEELLVESFPPEEYRELEHLREYTDRIGNFHNNIIF 56 Query: 190 SEGCLV-----YLAEDFGF-KSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTN 243 + + + ++F + + P + + H ++ + + Sbjct: 57 DDDLPIGFITYWDFDEFYYVEHFATNPALRNGGYGKRTLEHLCEFLKRPIVLEVERPVEE 116 Query: 244 SDQPA 248 + Sbjct: 117 MAKRR 121 >3feh_A Centaurin-alpha-1; structural genomics consortium, GAP, GTPase activation, SGC, cytoplasm, metal-binding, nucleus, phosphoprotein, polymorphism; 1.90A {Homo sapiens} PDB: 3fm8_C Length = 386 Score = 28.3 bits (62), Expect = 2.0 Identities = 15/126 (11%), Positives = 32/126 (25%), Gaps = 7/126 (5%) Query: 119 DSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIE 178 + W + L P A +L + ++ + + Sbjct: 229 EDGKEIVDWFNALR-----AARFHYLQVAFPG-ASDADLVPKLSRNYLKEGYMEKTGPKQ 282 Query: 179 KVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIF 238 KRWF + L+Y + + I S +++ + H Sbjct: 283 TEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKE-SGYTVLHGFPPSTQGHHWPHGI 341 Query: 239 SESTNS 244 + T Sbjct: 342 TIVTPD 347 >2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115 Score = 28.3 bits (62), Expect = 2.4 Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 3/66 (4%) Query: 184 KRWFVTSEGCLVYLAEDFGFK---SLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSE 240 +RWFV + Y + + L + + ++ F S Sbjct: 26 ERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDGKKCLFLVKCFDKTFEISA 85 Query: 241 STNSDQ 246 S + Sbjct: 86 SDKKKK 91 >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 Length = 433 Score = 28.1 bits (62), Expect = 2.4 Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 4/38 (10%) Query: 69 KIQNADLILCNGLHLEETYMKYFTN----LKKGTKIIT 102 I D+IL N +E K K G KII+ Sbjct: 320 LIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIIS 357 >2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A* Length = 129 Score = 28.1 bits (61), Expect = 2.5 Identities = 10/52 (19%), Positives = 13/52 (25%) Query: 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIK 235 W V + LV+ E W S +R A H Sbjct: 36 PSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLSS 87 >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221 Score = 27.8 bits (61), Expect = 2.8 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 6/48 (12%) Query: 132 NAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRN------SILPL 173 + + + T D + + AR+ E IR+ + LPL Sbjct: 156 GGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPL 203 >3k2o_A Bifunctional arginine demethylase and lysyl- hydroxylase JMJD6; structural genomics consortium, SGC, alternative splicing, chromatin regulator; 1.75A {Homo sapiens} Length = 336 Score = 27.9 bits (61), Expect = 2.8 Identities = 9/44 (20%), Positives = 16/44 (36%) Query: 138 ENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVD 181 + IR+A + P + Y E S + +E+ D Sbjct: 8 KRIREAKRSARPELKDSLDWTRHNYYESFSLSPAAVADNVERAD 51 >1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Length = 108 Score = 27.6 bits (60), Expect = 3.8 Identities = 12/51 (23%), Positives = 19/51 (37%) Query: 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKI 234 KRW V S G Y A + + + I S R +R + ++ Sbjct: 25 KRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFEL 75 >2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1 Length = 170 Score = 27.6 bits (61), Expect = 3.8 Identities = 9/34 (26%), Positives = 14/34 (41%) Query: 191 EGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRH 224 EG + + +FG ++Y W E S M Sbjct: 64 EGSVEWFDTEFGRDNVYAWAKEQAGEVSHEMFGD 97 >3bb7_A Interpain A; cysteine protease, zymogen activation, bacterial odontopathogen, hydrolase; 1.50A {Prevotella intermedia} PDB: 3bba_A Length = 321 Score = 27.3 bits (60), Expect = 4.3 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%) Query: 83 LEETYMKYFTNLK-KGTKIITVTDGINPI-GVSEDTSVDSEPNPHAWMSLTNAMIYIENI 140 L++T+ G +I+ D + GVSE V+++ W L I N Sbjct: 7 LKQTHTYTVFGYTDGGFAVISADDLAPELLGVSESNFVETDNPSFKWW-LKAIDEVITNA 65 Query: 141 RK 142 K Sbjct: 66 VK 67 >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239 Score = 27.4 bits (60), Expect = 4.3 Identities = 8/53 (15%), Positives = 24/53 (45%), Gaps = 6/53 (11%) Query: 127 WMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRN------SILPL 173 + ++ +N+ + D S+ + + R+++E + N S++P+ Sbjct: 169 KLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPI 221 >3cvo_A Methyltransferase-like protein of unknown function; YP_167254.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} Length = 202 Score = 26.9 bits (59), Expect = 4.9 Identities = 4/47 (8%), Positives = 16/47 (34%) Query: 55 NDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKII 101 Y + ++ D++L +G + ++ + ++ Sbjct: 105 RSYPDYPLAVWRTEGFRHPDVVLVDGRFRVGCALATAFSITRPVTLL 151 >2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus} Length = 117 Score = 27.3 bits (59), Expect = 4.9 Identities = 8/82 (9%), Positives = 28/82 (34%), Gaps = 2/82 (2%) Query: 174 KTRIEKVDPEKRWFVTSEGCLVYL--AEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS 231 + +K K++ + S +++ +D + Y+ + + + + + Sbjct: 12 RNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQTDVYRADA 71 Query: 232 HKIKFIFSESTNSDQPAKQVAY 253 +I IF ++ + Sbjct: 72 KEIPRIFQILYANEGISSAKNL 93 >1wpb_A Hypothetical protein YFBU; structural genomics, MCSG, NCS, regulatory protein, protein structure initiative, PSI; 2.00A {Escherichia coli} SCOP: a.233.1.1 Length = 172 Score = 26.6 bits (59), Expect = 6.2 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Query: 128 MSLTNAMIYI-ENIRKALTALDPSNAKKYELNAR 160 M +TNA I N K +T LDP+NA++Y Sbjct: 9 MEMTNAQRLILSNQYKMMTMLDPANAERYRRLQT 42 >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold, motor, ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A Length = 422 Score = 26.9 bits (59), Expect = 6.2 Identities = 24/139 (17%), Positives = 42/139 (30%), Gaps = 23/139 (16%) Query: 173 LKTRIEKVDPEKRWFVTSEGCLVYLAEDFGF----KSLYLWPINSDSERSPSMMRHAINQ 228 + I K + + +G L L + FGF S YL D SPS +R + Sbjct: 37 IIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYL-AGPDDIYVSPSQIRRFNLR 95 Query: 229 M-------------RSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPA 275 + N D+P + L+ +S + + Sbjct: 96 TGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN-ARNKILFENLTPLHANSRLRMERGN 154 Query: 276 PTYLDLLRFSLTKIVDTLF 294 + DL +++D Sbjct: 155 GSTEDL----TARVLDLAS 169 >1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Length = 126 Score = 26.8 bits (58), Expect = 6.5 Identities = 9/65 (13%), Positives = 17/65 (26%), Gaps = 2/65 (3%) Query: 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMR--SHKIKFIFSES 241 RWF L Y + + + + + S + +N F Sbjct: 36 TRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVFPFRTFYLCAK 95 Query: 242 TNSDQ 246 T + Sbjct: 96 TGVEA 100 >1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A Length = 211 Score = 26.8 bits (58), Expect = 6.6 Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 6/63 (9%) Query: 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTN 243 KRW S+ Y D + + I+ +R + K F Sbjct: 128 KRWCALSKTVFYYYGSDKDKQQKGEFAIDG------YDVRMNNTLRKDGKKDCCFEICAP 181 Query: 244 SDQ 246 + Sbjct: 182 DKR 184 >2ob4_A Ubiquitin-conjugating enzyme E2-32 kDa complementing; ligase, UBL conjugation pathway, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 180 Score = 26.7 bits (58), Expect = 6.8 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 13/60 (21%) Query: 120 SEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEK 179 +EPN + ++ +++Y + K+ + REY++ IR +L K E+ Sbjct: 128 NEPNTFSPANVDASVMYRKW-------------KESKGKDREYTDIIRKQVLGTKVDAER 174 >3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.85A {Chlorobaculum tepidum} Length = 117 Score = 26.4 bits (58), Expect = 7.0 Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 3/76 (3%) Query: 34 GDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTN 93 D+T A + + + + + + I+ L+ + + E + Sbjct: 19 DDMTFR-AVNTLRNAGAIACEDTRRTSIL--LKHFGIEGKRLVSYHSFNEERAVRQVIEL 75 Query: 94 LKKGTKIITVTDGINP 109 L++G+ + VTD P Sbjct: 76 LEEGSDVALVTDAGTP 91 >3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus} Length = 279 Score = 26.5 bits (57), Expect = 7.6 Identities = 5/71 (7%), Positives = 16/71 (22%), Gaps = 9/71 (12%) Query: 184 KRWFVTSEGCLVY---------LAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKI 234 W L + ++++ + S Sbjct: 41 HYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVPEHPKKDFVFCLSNSLGD 100 Query: 235 KFIFSESTNSD 245 F+F ++ ++ Sbjct: 101 AFLFQTTSQTE 111 >2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A Length = 129 Score = 26.4 bits (58), Expect = 7.7 Identities = 18/80 (22%), Positives = 28/80 (35%) Query: 130 LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVT 189 T+A +Y E + L+ D A + A E + K+ LK V + RW Sbjct: 4 STSAEVYYEEAEEFLSKGDLVQACEKYYKAAEEAIKLLVIENNLKEITNNVKNKGRWKSE 63 Query: 190 SEGCLVYLAEDFGFKSLYLW 209 + L + LW Sbjct: 64 NLFKASKLLRSNNTEIPILW 83 >1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii} Length = 373 Score = 26.3 bits (57), Expect = 8.5 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 8/93 (8%) Query: 149 PSNAKKYELNAREYSEKIRNSILPLKTRIEKVDP-------EKRWFVTSEGCLVYLAEDF 201 A+ + A+ +EK I L EKV+ K + + + Sbjct: 261 DPRARILKQYAKLLAEKEGGEIYTLYQIAEKVEEIGIKYLGPKGIYPNVDFFSSIVFYSL 320 Query: 202 GFKSLYLWPINSDSERSPSMMRHAINQMRSHKI 234 GF+ + + + + R + H + ++ +KI Sbjct: 321 GFEPDFFPAVFASA-RVVGWVAHIMEYIKDNKI 352 >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229 Score = 26.3 bits (57), Expect = 8.6 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 6/53 (11%) Query: 127 WMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRN------SILPL 173 + ++ + + L P R +E+IR S+LPL Sbjct: 167 QLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL 219 >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3mnt_A* Length = 334 Score = 26.1 bits (57), Expect = 8.8 Identities = 4/21 (19%), Positives = 11/21 (52%) Query: 180 VDPEKRWFVTSEGCLVYLAED 200 ++ + + +E LVY+ + Sbjct: 187 MNTQLPTLLIAECVLVYMTPE 207 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.317 0.132 0.377 Gapped Lambda K H 0.267 0.0457 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,372,128 Number of extensions: 105781 Number of successful extensions: 396 Number of sequences better than 10.0: 1 Number of HSP's gapped: 380 Number of HSP's successfully gapped: 44 Length of query: 294 Length of database: 5,693,230 Length adjustment: 92 Effective length of query: 202 Effective length of database: 3,462,782 Effective search space: 699481964 Effective search space used: 699481964 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 56 (26.0 bits)