BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780537|ref|YP_003064950.1| periplasmic solute binding
protein [Candidatus Liberibacter asiaticus str. psy62]
(294 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 294
Score = 610 bits (1572), Expect = e-176, Method: Compositional matrix adjust.
Identities = 294/294 (100%), Positives = 294/294 (100%)
Query: 1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSY 60
MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSY
Sbjct: 1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSY 60
Query: 61 QVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDS 120
QVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDS
Sbjct: 61 QVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDS 120
Query: 121 EPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKV 180
EPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKV
Sbjct: 121 EPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKV 180
Query: 181 DPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSE 240
DPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSE
Sbjct: 181 DPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSE 240
Query: 241 STNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTLF 294
STNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTLF
Sbjct: 241 STNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTLF 294
>gi|254780717|ref|YP_003065130.1| zinc uptake ABC transporter [Candidatus Liberibacter asiaticus str.
psy62]
Length = 294
Score = 54.7 bits (130), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 115/263 (43%), Gaps = 10/263 (3%)
Query: 26 VLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEE 85
V+ S I I I + + T LV+ + H Y + ++A+ ++NAD+I G +E
Sbjct: 26 VVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEMES 85
Query: 86 TYMKYFTNLKKGTKIITVTDG--INPIGVSEDTS--VDSEPNP-HAWMSLTNAMIYIENI 140
+K +L K + ++T++ ++ I + ++ S DSE + H W++ N I
Sbjct: 86 FLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEADDLHLWLNPLNVQYIAHVI 145
Query: 141 RKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAED 200
L DP N YE N E+ ++ L + ++ V EK+ + Y A
Sbjct: 146 AMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQPV--EKKKIIVFHEAYRYFASH 203
Query: 201 FGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYG 260
+ S+ +P++ + +R+ +++ S KI +F + + + +T
Sbjct: 204 YNL-SIVTFPMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRSITNDTGV-MS 261
Query: 261 GVLYVDSLSKPDGPAPTYLDLLR 283
+L + + +GP Y L+R
Sbjct: 262 AILDPEGMLIAEGPE-LYFQLMR 283
>gi|254780981|ref|YP_003065394.1| hypothetical protein CLIBASIA_04410 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 122
Score = 30.4 bits (67), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 89 KYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALD 148
KYFT L ++ V+ INP G+ ED ++ S P PH + +A EN +K L+ +
Sbjct: 3 KYFTILT----MLFVSSAINPCGIEED-NLKSSPLPHIALESLSA----ENEKKELSEHE 53
Query: 149 PSNAKKYELNAREYSE 164
+ E +++SE
Sbjct: 54 KKVIESQENPKKQFSE 69
>gi|254780905|ref|YP_003065318.1| glutamate racemase [Candidatus Liberibacter asiaticus str. psy62]
Length = 271
Score = 24.6 bits (52), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 18/89 (20%)
Query: 164 EKIRNSILPLKTRIEK-VDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMM 222
+K++NSIL + I + +K F+ E +Y+A+D GF P + +
Sbjct: 10 KKLQNSILIFDSGIGGLIVLQKMRFLMPEYHFIYVADDVGF------PYGNWED------ 57
Query: 223 RHAINQMRSHKIKFIFSESTNSDQPAKQV 251
HA+ + ++ F+FS+ + QP V
Sbjct: 58 -HALKK----RLMFLFSDILDKYQPVLSV 81
>gi|254780628|ref|YP_003065041.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 395
Score = 23.5 bits (49), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 20 TTQKKVVLSSFSIIGDI---TQNIAKDLVTVTTLVEAGNDSHSYQVTS 64
T +K + GD+ ++N+A DL +T + + + H+Y++++
Sbjct: 208 TIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISN 255
>gi|254780847|ref|YP_003065260.1| hypothetical protein CLIBASIA_03710 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 282
Score = 23.1 bits (48), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 8 LLFSYIPM-SASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGND------SHSY 60
+LF+ P SAS +Q + + SS DI I +T LVE ++ Y
Sbjct: 51 ILFTNSPRPSASVISQIQSLGSSSQFWDDI---ITSGDLTHHLLVEESHNIFFIGPQRDY 107
Query: 61 QVTSADAIKI---QNADLILCNGLHLEE 85
+ IKI Q+A+ ILC GL+ +E
Sbjct: 108 ALLEKLNIKIVNEQHAETILCTGLYDDE 135
>gi|254780676|ref|YP_003065089.1| lipoyl synthase [Candidatus Liberibacter asiaticus str. psy62]
Length = 329
Score = 22.7 bits (47), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 144 LTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEK 184
+T D N KK+ L+A +E++R+ +I K D EK
Sbjct: 2 VTVFDTINKKKHVLHATPNAERLRHP-----EKIHKPDTEK 37
>gi|254781086|ref|YP_003065499.1| F0F1 ATP synthase subunit B' [Candidatus Liberibacter asiaticus
str. psy62]
Length = 176
Score = 22.7 bits (47), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 22 QKKVVLSSFSIIGDITQNIAKDL 44
QKK +SI+G++T+++ + L
Sbjct: 131 QKKASQEVYSIVGEVTKDLVRKL 153
>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1775
Score = 22.7 bits (47), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 125 HAWMSLTNAMIYIENIRKALTALD 148
H W + ++ I+I N KAL++L+
Sbjct: 607 HPWYGVHSSDIHILNYNKALSSLE 630
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,042
Number of Sequences: 1233
Number of extensions: 7137
Number of successful extensions: 22
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 11
length of query: 294
length of database: 328,796
effective HSP length: 73
effective length of query: 221
effective length of database: 238,787
effective search space: 52771927
effective search space used: 52771927
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 38 (19.2 bits)