RPSBLAST alignment for GI: 254780538 and conserved domain: TIGR01188

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. Length = 302

 Score = 96.7 bits (241), Expect = 6e-21
 Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 8/206 (3%)

Query: 23  NGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTV--ENAL 80
             + A++ VN  + E  +   +G NGAGK+T  + +  L+    G+  +    V  E   
Sbjct: 4   GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK 63

Query: 81  KADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSM 140
               I  +PQ  S+D       E++ MMGR   +           R   E LE   +   
Sbjct: 64  VRRSIGIVPQYASVDEDLTGR-ENLEMMGRLYGLPKDEAEE----RAE-ELLELFELGEA 117

Query: 141 RQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMI 200
             R +G  S G ++R+ +A +L  +  V+ +DEP   +D +T R +   +++L  E + I
Sbjct: 118 ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTI 177

Query: 201 LVSTHNINSIPSFCDRTIFLKKTVLA 226
           L++TH +      CDR   +    + 
Sbjct: 178 LLTTHYMEEADKLCDRIAIIDHGRII 203