RPSBLAST alignment for GI: 254780538 and conserved domain: TIGR01271

>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. Length = 1490
 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 51/220 (23%), Positives = 103/220 (46%), Gaps = 35/220 (15%)

Query: 8    TKGGLELKDISVTYPN-GYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDK 66
            + G ++++ ++  Y   G   L+D++  +       L+G  G+GKSTL  A++ L+  + 
Sbjct: 1214 SGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE- 1272

Query: 67   GSISI----FNQ-TVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVAS 121
            G I I    +N  T++   KA     IPQ            +  +  G ++  N      
Sbjct: 1273 GEIQIDGVSWNSVTLQTWRKA--FGVIPQ------------KVFIFSGTFR-KNLDPYEQ 1317

Query: 122  NNDYRIVTEALENVGMSSMRQRQIGEL-----------SIGQQKRVFLARALAQKSQVII 170
             +D  I   A E VG+ S+ ++   +L           S G ++ + LAR++  K+++++
Sbjct: 1318 WSDEEIWKVA-EEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILL 1376

Query: 171  MDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSI 210
            +DEP A +D  T + +   LK   + +  +++S H + ++
Sbjct: 1377 LDEPSAHLDPVTLQIIRKTLKQSFS-NCTVILSEHRVEAL 1415