RPSBLAST alignment for GI: 254780538 and conserved domain: TIGR01842

>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 57/216 (26%), Positives = 99/216 (45%), Gaps = 30/216 (13%)

Query: 9   KGGLELKDISVTYPNG-YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKG 67
           +G L ++++++  P G    L  ++  +      A+IG +G+GKSTL + I+G+ P   G
Sbjct: 314 EGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG 373

Query: 68  SISI----FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNN 123
           S+ +      Q          I Y+PQ             DV +       N  R   N 
Sbjct: 374 SVRLDGADLKQWDRETF-GKHIGYLPQ-------------DVELFPGTVAENIARFGENA 419

Query: 124 DYRIVTEALENVGMSSMRQR-------QIGE----LSIGQQKRVFLARALAQKSQVIIMD 172
           D   + EA +  G+  +  R        IG     LS GQ++R+ LARAL    +++++D
Sbjct: 420 DPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLD 479

Query: 173 EPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNIN 208
           EP + +D + E+ +   +K+L    I ++V TH  +
Sbjct: 480 EPNSNLDEEGEQALANAIKALKARGITVVVITHRPS 515