RPSBLAST alignment for GI: 254780538 and conserved domain: cd03224
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.. Length = 222
Score = 120 bits (304), Expect = 3e-28
Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 19/233 (8%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE+++++ Y L V+L +PE I AL+G NGAGK+TL + IMGL+P GSI
Sbjct: 1 LEVENLNAGY-GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRF 59
Query: 72 FNQTVENALKADL----IAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYR 126
+ + + I Y+P+ I FP L VE+ +++G Y R + R
Sbjct: 60 DGRDITGLPPHERARAGIGYVPEGRRI---FPELTVEENLLLGAY-----ARRRAKRKAR 111
Query: 127 I--VTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTER 184
+ V E + R++ G LS G+Q+ + +ARAL + +++++DEP + K
Sbjct: 112 LERVYELFPRLK--ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE 169
Query: 185 EMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNE 236
E+ ++ L +E + IL+ N DR L++ V+ G +++ +
Sbjct: 170 EIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222