RPSBLAST alignment for GI: 254780538 and conserved domain: cd03240
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204
Score = 41.0 bits (96), Expect = 3e-04
Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 14/169 (8%)
Query: 40 ITALIGLNGAGKSTLFQAI-MGLIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTF 98
+T ++G NGAGK+T+ +A+ L + + A LI + F
Sbjct: 24 LTLIVGQNGAGKTTIIEALKYALTG------ELPPNSKGGAHDPKLIREGEVRAQVKLAF 77
Query: 99 PILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFL 158
+ R + V + L+ G S ++ + L I R+ L
Sbjct: 78 ENANGKKYTITRSLAI-LENVIFCHQGESNWPLLDMRGRCSGGEKVLASLII----RLAL 132
Query: 159 ARALAQKSQVIIMDEPFAAID-FKTEREMIFLLKSLLNEDIM-ILVSTH 205
A ++ +DEP +D E + +++ ++ ++V TH
Sbjct: 133 AETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITH 181