BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide
binding/ATPase protein (iron) [Candidatus Liberibacter asiaticus str.
psy62]
(280 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 280
Score = 578 bits (1489), Expect = e-167, Method: Compositional matrix adjust.
Identities = 280/280 (100%), Positives = 280/280 (100%)
Query: 1 MKTAVASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMG 60
MKTAVASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMG
Sbjct: 1 MKTAVASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMG 60
Query: 61 LIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVA 120
LIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVA
Sbjct: 61 LIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVA 120
Query: 121 SNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDF 180
SNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDF
Sbjct: 121 SNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDF 180
Query: 181 KTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNEDNIQ 240
KTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNEDNIQ
Sbjct: 181 KTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNEDNIQ 240
Query: 241 KTFGAQVSPQSSILNESNIQTTFKAEVYPQINSTMCIKKS 280
KTFGAQVSPQSSILNESNIQTTFKAEVYPQINSTMCIKKS
Sbjct: 241 KTFGAQVSPQSSILNESNIQTTFKAEVYPQINSTMCIKKS 280
>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
ABC transporter protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 240
Score = 97.4 bits (241), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 114/239 (47%), Gaps = 20/239 (8%)
Query: 21 YPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENAL 80
+ NGY L+D+N I N I LIG NG+GKST+ + I G+I GS+ Q +
Sbjct: 19 HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---- 74
Query: 81 KADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSM 140
+ Y+PQ +I+ T P + + M +S +D V + L+ V +
Sbjct: 75 ----VGYVPQKVTIENTLP--------LSLMRFMTLSMPSSRDD---VLQILDRVNLIGK 119
Query: 141 RQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE-DIM 199
R I +LS G+ +R LA+AL +K ++++DEP IDF E + L+ S+
Sbjct: 120 YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179
Query: 200 ILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNEDNIQKTFGAQVSPQSSILNESN 258
IL+ +HN++ + + D I L + G I + + FG + + +I N +
Sbjct: 180 ILLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNAEYIRLFGTRATEILAIHNHKH 238
>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 262
Score = 90.9 bits (224), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 11/226 (4%)
Query: 23 NGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENA--- 79
N ++ V+L++ I L+G NGAGK+T F + GLI D GSI I +
Sbjct: 36 NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMY 95
Query: 80 LKADL-IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMS 138
+A L I+Y+PQ SI + + ++ Y+ +R + + L+ ++
Sbjct: 96 RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKR------HEKLDSLLKEFNIT 149
Query: 139 SMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDI 198
R LS GQ++R+ +AR+L I++DEPFA +D ++ L++ L + I
Sbjct: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI 209
Query: 199 MILVSTHNINSIPSFCDRT-IFLKKTVLASGLTSDIFNEDNIQKTF 243
IL++ HN++ I + DR I VLA G +I + ++++ +
Sbjct: 210 GILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 79.0 bits (193), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 112/211 (53%), Gaps = 17/211 (8%)
Query: 25 YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPL-DKGSISIFNQTV------- 76
+ LE+V+L + + I AL+ +G GKST+ I GL+ + D+G++ I NQ
Sbjct: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDK 81
Query: 77 ENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVG 136
++ L+ I ++ Q + F + +E+++ +N + Y+ + L +
Sbjct: 82 KSFLRCSKIGFVYQEHRLLMDFSV-IENIIFPQIIAGINHKTA-----YQRAMDLLSYMD 135
Query: 137 MSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSL-LN 195
MS R+ ++S G+Q+RV + RA+A K +I+ DEP +D KT +++ +LK L +
Sbjct: 136 MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVR 195
Query: 196 EDIMILVSTHNINSIPSFCDRTIFLKKTVLA 226
+ L++THN + + S DR I ++ ++A
Sbjct: 196 SGLAALIATHN-HDLASQMDRQITIRDGMIA 225
>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 68.6 bits (166), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 96/196 (48%), Gaps = 32/196 (16%)
Query: 32 NLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI-FNQTVENALKADL-IAYIP 89
NL + + I L+GL+GAGKSTL ++I GL P+ +G + + ++ N AD +
Sbjct: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
Query: 90 QTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRI-------------VTEALENVG 136
+ ++ F ++ + WR VA N + + V E LE V
Sbjct: 109 RMHTVSMVFQ----------QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158
Query: 137 MSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAID----FKTEREMIFLLKS 192
++ +I LS G ++RV ARA A + +++MDEPF+++D + + E++ L +
Sbjct: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
Query: 193 LLNEDIMILVSTHNIN 208
L I+ +H+IN
Sbjct: 219 LKKT---IVFVSHDIN 231
>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 438
Score = 67.8 bits (164), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 19/217 (8%)
Query: 12 LELKDISVTYP-----NGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDK 66
LE++DI ++ L+ VN + I L+G +G+GKSTL + I GL+
Sbjct: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
Query: 67 GSISIFNQTVENALKADLIAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDY 125
G + + +++ K I+ + QT ++ FP L V + V +G + + +
Sbjct: 72 GQVLFKGKKIKDPPKD--ISVVFQTFAL---FPWLTVLENVELG----LKAKGIDKEERR 122
Query: 126 RIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTERE 185
+ A++ +G+ E+S G +RV ARA +++MDEPF+A+D T
Sbjct: 123 KRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182
Query: 186 MIFLLKSLLNEDIM----ILVSTHNINSIPSFCDRTI 218
+ L L E + +L+ THNI CDR +
Sbjct: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVL 219
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 67.8 bits (164), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 113/248 (45%), Gaps = 39/248 (15%)
Query: 17 ISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAI------------MGLIPL 64
+SV Y AL D+NL IP+N++TALIG +G GKST + + G I L
Sbjct: 12 VSVCYGEKR-ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL 70
Query: 65 DKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNND 124
D +I+ +V+ + + Q + FP + D V G H A +
Sbjct: 71 D--GKNIYQSSVDVVRLRARVGMVFQRPN---PFPKSIYDNVAYGPRIHGLGNNKADID- 124
Query: 125 YRIVTEALENVGM-SSMRQRQIGE---LSIGQQKRVFLARALAQKSQVIIMDEPFAAID- 179
+IV +L+ + + ++ R + LS GQQ+RV +ARALA +VI+MDEP +A+D
Sbjct: 125 -QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDP 183
Query: 180 --FKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNED 237
+ E+I L+ E + I++ TH++ R + ED
Sbjct: 184 IATASVEELIHELR----ESLTIVIVTHSMQQAARVSQRAAMFH--------MGHLVEED 231
Query: 238 NIQKTFGA 245
+ K F A
Sbjct: 232 DTDKMFTA 239
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 66.2 bits (160), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 118/244 (48%), Gaps = 28/244 (11%)
Query: 10 GGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSI 69
G + ++S +Y + C + ++ I + TALIG +G GKST+ + + L + G I
Sbjct: 355 GHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGII 414
Query: 70 SIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYR 126
+I Q ++ K L I IPQ IL D + RY + AS+ +
Sbjct: 415 TIDGQDIKKITKESLRQTIGIIPQD-------TILFNDTL---RYNILYGNPNASDQE-- 462
Query: 127 IVTEALENVGMSSMRQRQ-------IGE----LSIGQQKRVFLARALAQKSQVIIMDEPF 175
+ A+E + S + +GE LS G+++RV +ARA+ + +II DE
Sbjct: 463 -LCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEAT 521
Query: 176 AAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFN 235
+++D TER + L + L+++ LV H +++I + +F + TV+ SG ++ +
Sbjct: 522 SSLDIITERHIQTALAT-LSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLIS 580
Query: 236 EDNI 239
+ I
Sbjct: 581 QGGI 584
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 65.1 bits (157), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 27/177 (15%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E K IS +Y N +++++ +P I +IG NGAGK+TLF+ + G D G+I +
Sbjct: 318 IEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
Query: 72 FNQTVENALKADLIAYIPQT------ESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDY 125
+TV ++Y+ Q+ E W +D+V + ++ +N R S ++
Sbjct: 377 -GETV-------CLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHE-INSRAYCSAFNF 427
Query: 126 RIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKT 182
+ +Q++IG LS GQ+ RV LA+ L VI++DEP +D +T
Sbjct: 428 K-----------GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473
Score = 34.3 bits (77), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 40/205 (19%)
Query: 28 LEDVNL-FIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIA 86
L+D+NL F P+ I ++G NGAGKST+ + + G+ G + +
Sbjct: 22 LDDINLSFYPDAKI-GILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT--------VG 72
Query: 87 YIPQTESIDWTFPI---LVEDVV----MMGRYKH--MNWRR------------VASNNDY 125
Y+PQ +D + + ++E V ++ RY MN+ + S +
Sbjct: 73 YLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLW 132
Query: 126 RIVTEALENVGMSSMRQRQIG----ELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFK 181
+ TE V + S+ G LS G+++RV L + L ++++DEP +D +
Sbjct: 133 DLETEV--QVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE 190
Query: 182 TEREMIFLLKSLLNEDIMILVSTHN 206
T + ++ K L +L+ TH+
Sbjct: 191 T---IAWMEKYLREYSGAVLMVTHD 212
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 64.3 bits (155), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 29/227 (12%)
Query: 9 KGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
KG +D+ +Y G+ L +NL +TAL+G +G+GKST+ +M + GS
Sbjct: 350 KGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGS 409
Query: 69 ISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMG---RYKHMNWRRVASN 122
I I + + + L I+Y+ Q DV + RY + R +A+
Sbjct: 410 IEIDGINIRDITFSSLRERISYVGQ-------------DVFLFSNTVRYNILIGRPMATE 456
Query: 123 NDY-RIVTEALENVGMSSMRQ---RQIGE----LSIGQQKRVFLARALAQKSQVIIMDEP 174
+ I A + + S+ Q +GE LS GQ++R+ +ARA+ + ++++DE
Sbjct: 457 EEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEA 516
Query: 175 FAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLK 221
+A+D TE + L L+ I+++ H I++I D IF++
Sbjct: 517 TSALDTHTENLVRQALSRLMQGRTTIVIA-HRISTIIE-ADHIIFIE 561
>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
Liberibacter asiaticus str. psy62]
Length = 257
Score = 62.8 bits (151), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 10/206 (4%)
Query: 40 ITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFP 99
I +IG +G GKS L + I+GLIP G + + + + A A+ + +
Sbjct: 41 ILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGA 100
Query: 100 IL----VEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIG-ELSIGQQK 154
+ V++ + M +H+N + ++ IV + VG+ + +LS G K
Sbjct: 101 LFSSMTVQENISMPIKEHLN---LPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIK 157
Query: 155 RVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE-DIMILVSTHNINSIPSF 213
RV LARALA ++ +DEP + +D E LL L + + + + TH++N++ S
Sbjct: 158 RVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLIST 217
Query: 214 CDR-TIFLKKTVLASGLTSDIFNEDN 238
C+R + KK ++ G SDI + ++
Sbjct: 218 CNRVAVIQKKGIMKEGTISDIVDSND 243
>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 234
Score = 58.5 bits (140), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 30/178 (16%)
Query: 43 LIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFP--I 100
++G +GAGKSTL + G +GSI + Q T S P I
Sbjct: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN--------------HTRSSPSKRPLSI 75
Query: 101 LVEDVVMMGRYKHMN-WRRVA---------SNNDYRIVTEALENVGMSSMRQRQIGELSI 150
L ++ + + H+ W+ +A + + V + LE V + R ++S
Sbjct: 76 LFQENNL---FSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSG 132
Query: 151 GQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE-DIMILVSTHNI 207
GQ++RV LAR L ++ ++++DEPFA D E++ LLK + +E + +L+ +HN+
Sbjct: 133 GQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNL 190
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 257
Score = 54.7 bits (130), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 109/250 (43%), Gaps = 36/250 (14%)
Query: 11 GLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
+E+K ++ Y N + AL D+NL + + G +G+GKSTL + I + G I
Sbjct: 17 AVEIKFLNKWYGN-FHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEI- 74
Query: 71 IFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMN--------------- 115
+I IP + I + DV M+ ++H N
Sbjct: 75 -------------IINGIPLNDDIRNIHEVR-RDVGMV--FQHFNLFSNLSVLENCTLGP 118
Query: 116 -W-RRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDE 173
W R++ + + L V ++ R LS G+ +R +AR+L + ++++ DE
Sbjct: 119 IWVRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDE 178
Query: 174 PFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSD 232
P +A+D + +E++ ++ L E + ++ TH + DR +F+ + ++ +
Sbjct: 179 PTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEE 238
Query: 233 IFNEDNIQKT 242
FN ++T
Sbjct: 239 FFNNPQHERT 248
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 53.9 bits (128), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 37/226 (16%)
Query: 1 MKTAVASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMG 60
++T +S K LE I+ Y + ++D +L I ++G NGAGK+TL + + G
Sbjct: 274 LQTTQSSGKLVLEADKITKQY-DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTG 332
Query: 61 LIPLDKGSISIFNQTVENALKADLIAYIPQT-ESIDWTFPILV-------EDVVMMGRYK 112
I D G I T+ LK IA I Q E ID + + +++ G +
Sbjct: 333 KIKPDCGFI-----TLGTNLK---IATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESR 384
Query: 113 HMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMD 172
H+ D+ + ++ + LS G++ R +AR LAQ +IMD
Sbjct: 385 HV----AGYIKDFLFHPDQAHSL---------MKHLSGGEKMRAIVARVLAQPFNFLIMD 431
Query: 173 EPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTI 218
EP +DF+T + FL +++ IL+ +H+ + F DRT+
Sbjct: 432 EPTNDLDFET---LDFLERTITQLQGTILIVSHDRD----FLDRTV 470
Score = 53.5 bits (127), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 97/216 (44%), Gaps = 28/216 (12%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
L L IS T G L+DV L I L+G NG+GKSTL + G+ G++ +
Sbjct: 6 LRLDHISATI-GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64
Query: 72 FNQTVENALK--ADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVT 129
+ + L+ DL + ++ ID T +E A + Y ++
Sbjct: 65 HSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIE----------------APYSPYSLLK 108
Query: 130 EALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFL 189
+ + Q +I LS+GQ + V L + L + ++I+DEP +DF+T + ++
Sbjct: 109 K------FNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT---IHWM 159
Query: 190 LKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVL 225
+ LL + ++ +H+ + + T++L + L
Sbjct: 160 EQELLKINSALIFVSHDRRFLETLSTTTVWLDRGCL 195
>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
subunits [Candidatus Liberibacter asiaticus str. psy62]
Length = 528
Score = 52.8 bits (125), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 105/217 (48%), Gaps = 30/217 (13%)
Query: 10 GGLELKDISVTYP--NGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKG 67
G + + +S YP + L++VN + AL+G +GAGK+++F I+ G
Sbjct: 286 GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSG 345
Query: 68 SISIFNQTVENALKA-----DLIAYIPQTESIDWTFPIL----VEDVVMMG-----RYKH 113
S+ I + ++ L + IA++PQ PI+ V D + +G R +
Sbjct: 346 SVEI--EGIDLRLLSLEEIRRFIAWVPQH-------PIMIAASVYDNIAIGCPHATRKEI 396
Query: 114 MNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDE 173
N +A +++ LEN G ++ LS GQ +R+ +ARA+ + S ++++DE
Sbjct: 397 QNAAMLAQAHEF---IGCLEN-GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDE 452
Query: 174 PFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSI 210
+A+D + E+++ +L+ I S H +++I
Sbjct: 453 MGSALDIENEQKIWKVLREQRRGRTTIFAS-HRLSAI 488
>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 565
Score = 42.0 bits (97), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 35/228 (15%)
Query: 29 EDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADL---I 85
++++ IPE + + G +G GKS ++GL+ L+KG+IS ++ + I
Sbjct: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408
Query: 86 AYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQI 145
Y+ Q S+ FPI + + +++ N I + + VG I
Sbjct: 409 GYLSQHCSL---FPISITENIILSH----------DQNSLHIAQKTAKIVGC----HEDI 451
Query: 146 GELSIGQQ-------------KRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKS 192
L G Q +++ L+R +A +++MDEP +D + + LLK
Sbjct: 452 LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511
Query: 193 LLNEDIMILVSTHNINSIPSFCDRT-IFLKKTVLASGLTSDIFNEDNI 239
I++ +H+ +I S D + IF GLT DIF + +
Sbjct: 512 FKENKKTIVIISHD-PTIISMSDFSLIFHPIQGSLFGLTQDIFKFNTV 558
>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 959
Score = 35.8 bits (81), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 132 LENVGMSSMRQRQIGE-LSIGQQKRVFLARALAQKSQ---VIIMDEPFAAIDFKTEREMI 187
L+ VG+ ++ Q LS G+ +RV LA+ L++++ + I+DEP + + +++
Sbjct: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
Query: 188 FLLKSLLNEDIMILVSTHNINSI 210
+L +L++ I+V HN+ I
Sbjct: 889 NILHTLVDRGNSIIVIEHNLEVI 911
Score = 27.3 bits (59), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTL 54
L+++++ +P N + + G++G+GKS+L
Sbjct: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
Score = 27.3 bits (59), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 13/78 (16%)
Query: 28 LEDVNLFIPENTITALIGLNGAGK-----STLFQAIMGLIPLDKGSISIFNQTVENALKA 82
L++V IP TA+ G++G GK STL++A +I K + I++ +
Sbjct: 640 LKNVTGSIPLGLFTAITGISGGGKSTFLISTLYKAAARIIMGSKYNPGIYD-------RI 692
Query: 83 DLIAYIPQTESIDWTFPI 100
D + YI + SI+ + PI
Sbjct: 693 DGLEYIDKVVSINQS-PI 709
>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 249
Score = 30.8 bits (68), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 88/194 (45%), Gaps = 29/194 (14%)
Query: 31 VNLFIPENTITALIGLNGAGKSTL---------FQAIMGLIPLDKGSISIFNQTVENALK 81
+NL + + + A++G NG+GKSTL ++ G I L KG + VE A K
Sbjct: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI-LYKGESILDWSIVERASK 80
Query: 82 ADLIAYIPQTESIDWTFPILVEDVVMMGRYK-HMNWRRVASNN------DY-RIVTEALE 133
+A+ +P+ + ++MM K +N +R A N D+ R V +
Sbjct: 81 GIFLAF---------QYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITA 131
Query: 134 NVGMS-SMRQRQIG-ELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLK 191
+G++ M +R + S G++K + + + + I+DE + +D + +
Sbjct: 132 ELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVN 191
Query: 192 SLLNEDIMILVSTH 205
+L ++D L+ TH
Sbjct: 192 ALRSQDRSFLIITH 205
>gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str.
psy62]
Length = 375
Score = 25.4 bits (54), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIP 63
+++K ++++ Y +L V F ++TI +G NG GK+ + +AI L P
Sbjct: 5 IKIKFLNISEFRNYASLRLV--FDAQHTI--FVGDNGVGKTNILEAISFLSP 52
>gi|254781049|ref|YP_003065462.1| succinyl-CoA synthetase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 398
Score = 25.0 bits (53), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 17/22 (77%)
Query: 1 MKTAVASTKGGLELKDISVTYP 22
M +AST+GG+++++++ YP
Sbjct: 130 MVAFIASTQGGMDIEEVAKDYP 151
>gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
psy62]
Length = 311
Score = 24.6 bits (52), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 34 FIPENT---ITALIGLNGAGKSTLFQAIMG 60
F+ +N+ AL+G AGKSTL +G
Sbjct: 15 FVQDNSRSGCVALVGATNAGKSTLVNRFVG 44
>gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62]
Length = 544
Score = 24.6 bits (52), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 202 VSTHNINSIPSFCDRTIFLKKTV 224
VS I++ +FCDRT+ LK V
Sbjct: 270 VSLPQIDNWQTFCDRTLSLKNEV 292
>gi|254780289|ref|YP_003064702.1| RNA polymerase sigma factor RpoD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 682
Score = 24.6 bits (52), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 17 ISVTYPNGYCALEDVNLFIPENTITA 42
I + GY +E++N F+P + +++
Sbjct: 35 IKLARQRGYVTIEELNAFLPPDEVSS 60
>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 497
Score = 24.3 bits (51), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 24/109 (22%)
Query: 152 QQKRVFLARALAQKSQVIIMDEPFAAIDFKT-------------EREMIFLLKSLLN--- 195
+ +F+ +A+AQ ++ I++ ++ DF R+ + L S L
Sbjct: 54 EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
Query: 196 -EDIMILVSTHNINSIPSFCDRTIFLKKTVLAS---GLTSDI--FNEDN 238
E+I+ + T +S+ SF + +++ L+S G TS I F +DN
Sbjct: 114 PENILAVTGTSGKSSVASFVQQ--ICQRSGLSSFQIGPTSTISSFAQDN 160
>gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62]
Length = 896
Score = 23.9 bits (50), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 55 FQAIMGLIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYK 112
+ A G P+D+G+I + + + DL+ + + + W I E V + K
Sbjct: 313 YGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGM-WREDIDYEKVAFTKKMK 369
>gi|254780226|ref|YP_003064639.1| translation-associated GTPase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 367
Score = 23.9 bits (50), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 42 ALIGLNGAGKSTLFQAI 58
+IGL GKSTLF A+
Sbjct: 6 GIIGLPNVGKSTLFNAL 22
>gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62]
Length = 404
Score = 23.5 bits (49), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 10/42 (23%)
Query: 25 YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDK 66
YC+++ + L G G GKS L L+P++K
Sbjct: 63 YCSMQGIYLH----------GDVGQGKSMLMNLFFALVPIEK 94
>gi|254780711|ref|YP_003065124.1| signal recognition particle protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 461
Score = 23.5 bits (49), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 30 DVNLFIPENTITALIGLNGAGKST 53
+++L P + L+GL G+GK+T
Sbjct: 92 ELDLNAPSPLVIMLVGLQGSGKTT 115
>gi|254780664|ref|YP_003065077.1| bifunctional phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 536
Score = 23.5 bits (49), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 201 LVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNEDNIQKT 242
L+S HN + F R + ++++G T + E+ I T
Sbjct: 20 LISVHNKTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVT 61
>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 789
Score = 23.5 bits (49), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
Query: 45 GLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAYIP 89
G+ G+GKSTL M LI G NQ V NA +D++ P
Sbjct: 508 GVGGSGKSTL----MNLIKYAFG-----NQYVINAEASDIMQNRP 543
>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 470
Score = 22.7 bits (47), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 42 ALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
A++G GKSTL ++G L GS S
Sbjct: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQS 235
>gi|254780943|ref|YP_003065356.1| glucosamine--fructose-6-phosphate aminotransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 608
Score = 22.3 bits (46), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 9 KGGLELKDISVTYPNGYCALE 29
+G L++K+IS + GY A E
Sbjct: 480 EGALKIKEISYLHAEGYAAGE 500
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,741
Number of Sequences: 1233
Number of extensions: 6257
Number of successful extensions: 80
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 42
length of query: 280
length of database: 328,796
effective HSP length: 73
effective length of query: 207
effective length of database: 238,787
effective search space: 49428909
effective search space used: 49428909
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)