HHsearch alignment for GI: 254780539 and conserved domain: COG0559
>COG0559 LivH Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism].
Probab=95.66 E-value=0.13 Score=27.36 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=56.2
Q ss_pred HHCCCCCCCHHHCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 1102224211211531-----002700013578876799999999888-----788872468899871787104677999
Q gi|254780539|r 112 LSPSAVYVENIFLGNT-----LSMSRSDTIQVLIITFSVACIVYMKWK-----DFVLLFFDERHAHSVGINVKLLKMLFF 181 (273)
Q Consensus 112 ~~~~~~~l~~~LfG~i-----l~i~~~di~~~~~~~~i~~~~~~~~~r-----~l~~~sfD~~~A~~~Gi~v~~~~~l~l 181 (273)
T Consensus 120 ~g~~~~~~p~~~~~~~~~~g~~~~~~~~l~~~~~s~~~~~~l~~~l~rT~~G~a~RA~~~n~~~A~l~GInv~~v~~~tf 199 (297)
T COG0559 120 FGPRPVGLPPALSGSVRFLGGVTLPTYRLFIIAVSLALLLGLWLLLRRTRLGRALRAVAENRKMAALLGINVERVIALTF 199 (297)
T ss_pred ECCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHH
T ss_conf 58766667714214421032001069999999999999999999999837718898760489899880986899999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780539|r 182 SLLTITIVIG 191 (273)
Q Consensus 182 ~l~al~v~~~ 191 (273)
T Consensus 200 ~lg~~lAgla 209 (297)
T COG0559 200 ALGGALAGLA 209 (297)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999