HHsearch alignment for GI: 254780539 and conserved domain: COG0559

>COG0559 LivH Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism].
Probab=95.66  E-value=0.13  Score=27.36  Aligned_cols=80  Identities=14%  Similarity=0.157  Sum_probs=56.2

Q ss_pred             HHCCCCCCCHHHCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHCCHHHHHHCCCCCHHHHHHHH
Q ss_conf             1102224211211531-----002700013578876799999999888-----788872468899871787104677999
Q gi|254780539|r  112 LSPSAVYVENIFLGNT-----LSMSRSDTIQVLIITFSVACIVYMKWK-----DFVLLFFDERHAHSVGINVKLLKMLFF  181 (273)
Q Consensus       112 ~~~~~~~l~~~LfG~i-----l~i~~~di~~~~~~~~i~~~~~~~~~r-----~l~~~sfD~~~A~~~Gi~v~~~~~l~l  181 (273)
T Consensus       120 ~g~~~~~~p~~~~~~~~~~g~~~~~~~~l~~~~~s~~~~~~l~~~l~rT~~G~a~RA~~~n~~~A~l~GInv~~v~~~tf  199 (297)
T COG0559         120 FGPRPVGLPPALSGSVRFLGGVTLPTYRLFIIAVSLALLLGLWLLLRRTRLGRALRAVAENRKMAALLGINVERVIALTF  199 (297)
T ss_pred             ECCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHH
T ss_conf             58766667714214421032001069999999999999999999999837718898760489899880986899999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254780539|r  182 SLLTITIVIG  191 (273)
Q Consensus       182 ~l~al~v~~~  191 (273)
T Consensus       200 ~lg~~lAgla  209 (297)
T COG0559         200 ALGGALAGLA  209 (297)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999