HHsearch alignment for GI: 254780539 and conserved domain: COG4139
>COG4139 BtuC ABC-type cobalamin transport system, permease component [Coenzyme metabolism].
Probab=98.83 E-value=1.2e-07 Score=61.51 Aligned_cols=223 Identities=12% Similarity=0.138 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHCC--CC----HHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999987779999996589963248999999999--------998314--41----456899999999999986
Q gi|254780539|r 17 AIWMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIV--------VCHRLN--IP----LSVGATISGMLATGIMVK 82 (273)
Q Consensus 17 all~~~li~~~~~~lG~~~v~r~~s~~~~alsH~~l~Gia--------la~~l~--~~----~~~ga~~~~ll~~~li~~ 82 (273)
T Consensus 59 R~lAv~~vGAsLAVsGAvm----QaL~~N~LAEPGllGVs~GA~Valv~~vL~~~~l~~~~a~~~~Ai~GALl~TliLl~ 134 (326)
T COG4139 59 RTLAVLLVGAALAVSGAVM----QALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLCAIAGALIITLILLR 134 (326)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899999727888708999----999658666876343158840999999997477575899999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHH---H---HHCCC---CCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3102465115689999999999999975---2---11022---2421121153100270001357887679999999988
Q gi|254780539|r 83 IKETTKLREDVAIAVVYIIFYSFAMFML---S---LSPSA---VYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKW 153 (273)
Q Consensus 83 l~~~~~~~~d~~igi~~~~~~algvlli---s---~~~~~---~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~ 153 (273)
T Consensus 135 ~aRr~~lT-----arLLLvGVALGIi~~A~mTWA~YFS~sL~LRQLMYWmMG~~~GVdW~Q~~L~La-~~PvvIWl~~Qg 208 (326)
T COG4139 135 FARRHLST-----SRLLLAGVALGIICSALMTWAIYFSTSLDLRQLMYWMMGGFGGVDWRQSWLMLA-LIPVLIWICCQS 208 (326)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHHHHHHHHCCC
T ss_conf 99999989-----899999999999888785620031065269999999967756742999989999-977888610167
Q ss_pred HHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 87888724688998717871046779999999999999999899999999999999998520898999999999999999
Q gi|254780539|r 154 KDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSS 233 (273)
Q Consensus 154 r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~~ 233 (273)
T Consensus 209 ~vLn~l~LGE~~ArQLG~~lh~~R~~LvLAi~llVG~SVAL~GvIgFiGL-ViPHiLRLt~~td~RlLLp~~Al~Ga~~L 287 (326)
T COG4139 209 RPLNMLALGEISARQLGLPLWFWRNVLVLATGWMVGVSVALAGAIGFIGL-VIPHILRLCGLTDHRLLLPGCALAGASAL 287 (326)
T ss_pred CCCHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCHHHHCCHHH
T ss_conf 63147762514688729718999999999999998689997527767667-68899998357423201251465032799
Q ss_pred HHHHHHHHH----HCCCCHHH
Q ss_conf 999999999----57981899
Q gi|254780539|r 234 FLGSYISYF----LDCSPGGI 250 (273)
Q Consensus 234 ~~G~~lS~~----~~lp~g~~ 250 (273)
T Consensus 288 l~AD~vARlaL~S~ELPiGVV 308 (326)
T COG4139 288 LLADIVARLALASAELPIGVV 308 (326)
T ss_pred HHHHHHHHHHHCCCCCCCEEE
T ss_conf 999999998712367773268