HHsearch alignment for GI: 254780539 and conserved domain: PRK09512
>PRK09512 rbsC ribose ABC transporter permease protein; Reviewed.
Probab=94.54 E-value=0.27 Score=25.44 Aligned_cols=136 Identities=21% Similarity=0.283 Sum_probs=68.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15310027000135788767999999--9988878887246889987178710467799999999999999998999999
Q gi|254780539|r 124 LGNTLSMSRSDTIQVLIITFSVACIV--YMKWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVI 201 (273)
Q Consensus 124 fG~il~i~~~di~~~~~~~~i~~~~~--~~~~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~ 201 (273)
T Consensus 166 ~g~~~gip~~-~~i~i~v~ii~~~~l~~T~~Gr~lyAiG~N~~AA~~sGI~v~r~~i~~f~lsg~lagla----Gil~~~ 240 (321)
T PRK09512 166 IGRPLGVPTP-VWIMAIVFAAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLAALA----GIIEVA 240 (321)
T ss_pred CCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHCCCCCEEEEEHHHHHHHHHHHH----HHHHHH
T ss_conf 3651565699-99999999999999986688748879779899999809885148874799999999999----999999
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------HHHHHHHH-----------HHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999852089899999999999999------99999999-----------995798189999999999999999
Q gi|254780539|r 202 ATVITPGATAKLMSKSFGTYLVSSSLLGATS------SFLGSYIS-----------YFLDCSPGGIIVIIETSLFLLCLF 264 (273)
Q Consensus 202 allv~Paa~A~~~~~~~~~~~~~s~~~g~~~------~~~G~~lS-----------~~~~lp~g~~Iv~~~~~~f~~~~~ 264 (273)
T Consensus 241 ~~---~s~~-p~~g~~~~l~aIaAvviGG~sl~GG~G~v~Gt~lGal~l~~i~~gl~~~gv~~~~q-~~v~G~ili~AV~ 315 (321)
T PRK09512 241 RL---SSAQ-PTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNALNLLGVSSYYQ-MIVKAVVILLAVL 315 (321)
T ss_pred HH---CCCC-CCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHEE
T ss_conf 70---7888-43344347999999998043656980774999999999999999998819988999-9999999743146
Q ss_pred HCCCC
Q ss_conf 80424
Q gi|254780539|r 265 FFSKQ 269 (273)
Q Consensus 265 ~~~~~ 269 (273)
T Consensus 316 id~~~ 320 (321)
T PRK09512 316 VDNKK 320 (321)
T ss_pred EECCC
T ss_conf 50467