HHsearch alignment for GI: 254780539 and conserved domain: TIGR03408
>TIGR03408 urea_trans_UrtC urea ABC transporter, permease protein UrtC. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.41 E-value=0.29 Score=25.27 Aligned_cols=105 Identities=18% Similarity=0.223 Sum_probs=54.3
Q ss_pred HHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH------------HCCHH
Q ss_conf 8878887246889987178710467799999999999999998999999999-9999999852------------08989
Q gi|254780539|r 153 WKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATV-ITPGATAKLM------------SKSFG 219 (273)
Q Consensus 153 ~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~all-v~Paa~A~~~------------~~~~~ 219 (273)
T Consensus 192 G~~lrAvr~ne~aa~~lGinv~r~k~~aF~isa~lagl----aG~l~a~~~~~v~P~~f~~~~~i~~~~~vvlGG~Gs~~ 267 (313)
T TIGR03408 192 GRVLIAIRDAENRVRFLGYDPANYKVFVFVLSAGIAGI----AGALYVPQVGIISPSEMGIVPSIEMVIWVAVGGRGTLI 267 (313)
T ss_pred HHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHCCEECHHHCCHHHHHHHHHHEEECCCCCCH
T ss_conf 89888576166999882882999999999999999999----99999987063483436599999988830456885318
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999999999579818999999999999999980424
Q gi|254780539|r 220 TYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIETSLFLLCLFFFSKQ 269 (273)
Q Consensus 220 ~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~~~~~~~ 269 (273)
T Consensus 268 GavlGa~ll~~l~~~~----~~~--~~~~--~~~i~g~ili~ill~~P~G 309 (313)
T TIGR03408 268 GAVLGALLVNYAKTFF----SEA--FPEA--WLYILGALFVVVVLFLPKG 309 (313)
T ss_pred HHHHHHHHHHHHHHHH----HHH--HHHH--HHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999999----986--5669--9999999999999991897