HHsearch alignment for GI: 254780539 and conserved domain: TIGR03409
>TIGR03409 urea_trans_UrtB urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.07 E-value=0.2 Score=26.24 Aligned_cols=130 Identities=16% Similarity=0.197 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00270001357887679999999988-----8788872468899871787104677999999999999999989999999
Q gi|254780539|r 128 LSMSRSDTIQVLIITFSVACIVYMKW-----KDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIA 202 (273)
Q Consensus 128 l~i~~~di~~~~~~~~i~~~~~~~~~-----r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~a 202 (273)
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~l~~~l~rT~~G~~lrAi~~n~~aA~~~GInv~r~~~~af~is~~lagla----G~l~a~~ 213 (291)
T TIGR03409 138 LSLPYNRLFIIVLALAVLLALALLLYRTRLGLRVRAVTQNRVMAAALGINTRRVDALTFALGSGIAGVA----GVALTLI 213 (291)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_conf 223199999999999999999999837856588888724799999859989999999999999999999----9999988
Q ss_pred ---------HHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf ---------999999999852--089899999999999999999999999957981899999999999999998042
Q gi|254780539|r 203 ---------TVITPGATAKLM--SKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIETSLFLLCLFFFSK 268 (273)
Q Consensus 203 ---------llv~Paa~A~~~--~~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~~~~~~ 268 (273)
T Consensus 214 ~~v~p~~g~~~~~~~~~~~vlGG~gs~~Gai~Ga~~lg~l~~~~~~~~~~~~-------~~~~~~~~li~vLl~rP~ 283 (291)
T TIGR03409 214 GNVGPTLGQGYIVDSFLVVVFGGVGSLWGTVVAAFGLGVANKILEYFTGASL-------AKVLVLVLIILFLQWRPQ 283 (291)
T ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCCC
T ss_conf 6589752399999999999974656458999999999999999998702899-------999999999999998699