HHsearch alignment for GI: 254780539 and conserved domain: TIGR03622

>TIGR03622 urea_t_UrtB_arc urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease subunits restricted to the Archaea. Several lines of evidence suggest this protein is functionally analogous, as well as homologous, to the UrtB subunit of the Corynebacterium glutamicum urea transporter. All members of the operon show sequence similarity to urea transport subunits, the gene is located near the urease structural subunits in two of three species, and partial phylogenetic profiling identifies this permease subunit as closely matching the profile of urea utilization.
Probab=97.90  E-value=0.0013  Score=38.64  Aligned_cols=129  Identities=13%  Similarity=0.118  Sum_probs=72.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             02700013578876799999999888-----7888724688998717871046779999999999999999899999999
Q gi|254780539|r  129 SMSRSDTIQVLIITFSVACIVYMKWK-----DFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIAT  203 (273)
Q Consensus       129 ~i~~~di~~~~~~~~i~~~~~~~~~r-----~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~al  203 (273)
T Consensus       129 ~~~~~~~~~~~~~~~~~~~l~~~l~rT~~G~a~RAv~~n~~~A~~~GIn~~r~~~~~f~is~~lAg~a----G~l~a~~~  204 (283)
T TIGR03622       129 TYSTYRVFLPLVAIGVLVGLYVLFTRTEFGVRARATIQDPETARAMGVDTDRMYVTTFAIGSGLAGLT----GALYAPIG  204 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_conf             23299999999999999999999986889898899965899997769787489999999999999999----99998750


Q ss_pred             HHH---------HHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999---------99999852--089899999999999999999999999957981899999999999999998042
Q gi|254780539|r  204 VIT---------PGATAKLM--SKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIETSLFLLCLFFFSK  268 (273)
Q Consensus       204 lv~---------Paa~A~~~--~~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~~~~~~  268 (273)
T Consensus       205 ~v~p~~g~~~~~~~~~a~ilGG~gs~~Gaiigg~ilg~~~~~~~~~~~~~~~~-------~~~~~ili~vL~~rP~  273 (283)
T TIGR03622       205 AITPDRGSIFLVEAFVAVVVGGPSVVLGTALAGGLLGFINAVFSNLYGTFVGL-------IALLIVAIIALRVLPD  273 (283)
T ss_pred             CCCCCCHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCC
T ss_conf             75866148999998671214787655899999999999999999996589999-------9999999999998799