HHsearch alignment for GI: 254780539 and conserved domain: TIGR03622
>TIGR03622 urea_t_UrtB_arc urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease subunits restricted to the Archaea. Several lines of evidence suggest this protein is functionally analogous, as well as homologous, to the UrtB subunit of the Corynebacterium glutamicum urea transporter. All members of the operon show sequence similarity to urea transport subunits, the gene is located near the urease structural subunits in two of three species, and partial phylogenetic profiling identifies this permease subunit as closely matching the profile of urea utilization.
Probab=97.90 E-value=0.0013 Score=38.64 Aligned_cols=129 Identities=13% Similarity=0.118 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02700013578876799999999888-----7888724688998717871046779999999999999999899999999
Q gi|254780539|r 129 SMSRSDTIQVLIITFSVACIVYMKWK-----DFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIAT 203 (273)
Q Consensus 129 ~i~~~di~~~~~~~~i~~~~~~~~~r-----~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~al 203 (273)
T Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~l~rT~~G~a~RAv~~n~~~A~~~GIn~~r~~~~~f~is~~lAg~a----G~l~a~~~ 204 (283)
T TIGR03622 129 TYSTYRVFLPLVAIGVLVGLYVLFTRTEFGVRARATIQDPETARAMGVDTDRMYVTTFAIGSGLAGLT----GALYAPIG 204 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_conf 23299999999999999999999986889898899965899997769787489999999999999999----99998750
Q ss_pred HHH---------HHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999---------99999852--089899999999999999999999999957981899999999999999998042
Q gi|254780539|r 204 VIT---------PGATAKLM--SKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIETSLFLLCLFFFSK 268 (273)
Q Consensus 204 lv~---------Paa~A~~~--~~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~~~~~~ 268 (273)
T Consensus 205 ~v~p~~g~~~~~~~~~a~ilGG~gs~~Gaiigg~ilg~~~~~~~~~~~~~~~~-------~~~~~ili~vL~~rP~ 273 (283)
T TIGR03622 205 AITPDRGSIFLVEAFVAVVVGGPSVVLGTALAGGLLGFINAVFSNLYGTFVGL-------IALLIVAIIALRVLPD 273 (283)
T ss_pred CCCCCCHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCC
T ss_conf 75866148999998671214787655899999999999999999996589999-------9999999999998799