HHsearch alignment for GI: 254780539 and conserved domain: cd06579
>cd06579 TM_PBP1_transp_AraH_like Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to ge
Probab=97.42 E-value=0.007 Score=34.46 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=30.9
Q ss_pred HHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 88788872468899871787104677999999999999
Q gi|254780539|r 153 WKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVI 190 (273)
Q Consensus 153 ~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~ 190 (273)
T Consensus 142 G~~lrAv~~n~~~A~~~Gi~v~r~~~~af~is~~lagl 179 (263)
T cd06579 142 GRYLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGL 179 (263)
T ss_pred CCHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 11044313189999983998689654899898999999