HHsearch alignment for GI: 254780539 and conserved domain: cd06580
>cd06580 TM_PBP1_transp_TpRbsC_like Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Probab=95.20 E-value=0.18 Score=26.45 Aligned_cols=99 Identities=16% Similarity=0.105 Sum_probs=63.3
Q ss_pred HHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--------HHHHHHHHHHHHHH-HCCHHHH
Q ss_conf 887888724688998717871046779999999999999--999899999--------99999999999852-0898999
Q gi|254780539|r 153 WKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIG--FQTVGILLV--------IATVITPGATAKLM-SKSFGTY 221 (273)
Q Consensus 153 ~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~--v~~vG~llv--------~allv~Paa~A~~~-~~~~~~~ 221 (273)
T Consensus 118 G~~lravG~n~~aA~~~Gi~v~~~~~~a~~isg~laGlaG~~~~~~~~~~~~~~~~~g~g~~---aia~~ilg~~~p~g~ 194 (234)
T cd06580 118 GLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLVLGVQGRFTEGMSAGYGFI---AIAVALLGRWNPLGI 194 (234)
T ss_pred HHEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH---HHHHHHHHCCCHHHH
T ss_conf 74500331889999887988889999999999999999999999865025776776661499---999999979988999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9999999999999999999995798189999999
Q gi|254780539|r 222 LVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIE 255 (273)
Q Consensus 222 ~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~ 255 (273)
T Consensus 195 ~~~al~fg~l~~-g~~~lq~~~~ip~~~~~~i~~ 227 (234)
T cd06580 195 LLAALLFGALEA-GGIALQRSGGVPSELVQVLPG 227 (234)
T ss_pred HHHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHH
T ss_conf 999999999999-999997617999999999999