HHsearch alignment for GI: 254780539 and conserved domain: cd06582

>cd06582 TM_PBP1_LivH_like Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transpo
Probab=97.48  E-value=0.0058  Score=34.91  Aligned_cols=129  Identities=20%  Similarity=0.243  Sum_probs=66.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2700013578876799999999-----88878887246889987178710467799999999999999998999999999
Q gi|254780539|r  130 MSRSDTIQVLIITFSVACIVYM-----KWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATV  204 (273)
Q Consensus       130 i~~~di~~~~~~~~i~~~~~~~-----~~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~all  204 (273)
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~l~rT~~Gr~l~Ai~~n~~aA~~~Ginv~r~k~~af~isg~lagla----G~l~a~~~~  201 (272)
T cd06582         126 IPPYRLFIIAVALVLLAALYLFLRRTRLGRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGLA----GVLLAPITG  201 (272)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHC
T ss_conf             4189999999999999999999983950456847633989998859988898799989999999999----999999865


Q ss_pred             ---------HHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             ---------99999998520--898999999999999999999999999579818999999999999999980424
Q gi|254780539|r  205 ---------ITPGATAKLMS--KSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIETSLFLLCLFFFSKQ  269 (273)
Q Consensus       205 ---------v~Paa~A~~~~--~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~~~~~~~  269 (273)
T Consensus       202 ~~~~~~~~~~~~~i~~vvlGG~gs~~G~v~Ga~~~~~l~~~~~~~~------~~-~~~~~~~~~~li~vll~~P~G  270 (272)
T cd06582         202 VSPTMGLLLLLKAFAAVVLGGLGSIPGAVVGGLLLGLAESLAAAYL------SS-GYKDAVAFVLLILVLLVRPQG  270 (272)
T ss_pred             CCCCCHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHH------HH-HHHHHHHHHHHHHHHHHCCCC
T ss_conf             7985037899888782036898856999999999999999999851------49-999999999999999974899