HHsearch alignment for GI: 254780539 and conserved domain: pfam02653
>pfam02653 BPD_transp_2 Branched-chain amino acid transport system / permease component. This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Probab=97.05 E-value=0.018 Score=32.18 Aligned_cols=193 Identities=18% Similarity=0.130 Sum_probs=91.9
Q ss_pred HHHHHHHHHHH--HHH----HCCCCHHH---HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 48999999999--998----31441456---8999999999999863102465115689999999999999975211---
Q gi|254780539|r 46 GISHAIFPGIV--VCH----RLNIPLSV---GATISGMLATGIMVKIKETTKLREDVAIAVVYIIFYSFAMFMLSLS--- 113 (273)
Q Consensus 46 alsH~~l~Gia--la~----~l~~~~~~---ga~~~~ll~~~li~~l~~~~~~~~d~~igi~~~~~~algvllis~~--- 113 (273)
T Consensus 29 n~a~g~~~~lgay~~~~l~~~~~~~~~~~~~~a~~~~~~~g~i~~~~~~r~~~~~~--~~tl~~~~~~~~~~~~~~~~~~ 106 (267)
T pfam02653 29 NLGVGGFMALGAYVAALLLALGGSNLWLALLAGLLVGAAVGLLNGLLVVRLKVPEV--IVTLLLNFILRGLTLFLLTGIL 106 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHCCC
T ss_conf 57999999999999999999805308999999999999999974586765214299--9999999999999999986355
Q ss_pred C--CCCC-CCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 0--2224-2112115310027000135788767999999998-----887888724688998717871046779999999
Q gi|254780539|r 114 P--SAVY-VENIFLGNTLSMSRSDTIQVLIITFSVACIVYMK-----WKDFVLLFFDERHAHSVGINVKLLKMLFFSLLT 185 (273)
Q Consensus 114 ~--~~~~-l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~-----~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~a 185 (273)
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~T~~G~~lrAv~~n~~aA~~~GI~~~~~~~~~f~is~ 186 (267)
T pfam02653 107 GGPAGTSTIVDLLGFPGLFLSFGFGVIFLLALLLALLVWLLLRRTRFGRALRAVGENPRAARYAGINVKRTKILAFVLSG 186 (267)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 78877555532554200211257999999999999999999995888469999966599998869988999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 999999999899999999----------999999998520--898999999999999999999999999579818
Q gi|254780539|r 186 ITIVIGFQTVGILLVIAT----------VITPGATAKLMS--KSFGTYLVSSSLLGATSSFLGSYISYFLDCSPG 248 (273)
Q Consensus 186 l~v~~~v~~vG~llv~al----------lv~Paa~A~~~~--~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g 248 (273)
T Consensus 187 ~lagla----G~l~~~~~~~~~p~~~~~~~~~~~~~~viGG~gs~~G~~~ga~~lg~~~~~~~~----~~g~~~~ 253 (267)
T pfam02653 187 ALAGLA----GALLVLSTGSADPNAGLGLGFDAIAAVVLGGAGSPIGAIVGALIIGLLQSLGLT----LLGIPPE 253 (267)
T ss_pred HHHHHH----HHHHHHHHCCCCCCCCHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHH----HCCCCHH
T ss_conf 999999----999998835648784276998977510168999629999999999999999999----8299889