HHsearch alignment for GI: 254780539 and conserved domain: pfam02653

>pfam02653 BPD_transp_2 Branched-chain amino acid transport system / permease component. This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Probab=97.05  E-value=0.018  Score=32.18  Aligned_cols=193  Identities=18%  Similarity=0.130  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHH--HHH----HCCCCHHH---HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf             48999999999--998----31441456---8999999999999863102465115689999999999999975211---
Q gi|254780539|r   46 GISHAIFPGIV--VCH----RLNIPLSV---GATISGMLATGIMVKIKETTKLREDVAIAVVYIIFYSFAMFMLSLS---  113 (273)
Q Consensus        46 alsH~~l~Gia--la~----~l~~~~~~---ga~~~~ll~~~li~~l~~~~~~~~d~~igi~~~~~~algvllis~~---  113 (273)
T Consensus        29 n~a~g~~~~lgay~~~~l~~~~~~~~~~~~~~a~~~~~~~g~i~~~~~~r~~~~~~--~~tl~~~~~~~~~~~~~~~~~~  106 (267)
T pfam02653        29 NLGVGGFMALGAYVAALLLALGGSNLWLALLAGLLVGAAVGLLNGLLVVRLKVPEV--IVTLLLNFILRGLTLFLLTGIL  106 (267)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHCCC
T ss_conf             57999999999999999999805308999999999999999974586765214299--9999999999999999986355


Q ss_pred             C--CCCC-CCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             0--2224-2112115310027000135788767999999998-----887888724688998717871046779999999
Q gi|254780539|r  114 P--SAVY-VENIFLGNTLSMSRSDTIQVLIITFSVACIVYMK-----WKDFVLLFFDERHAHSVGINVKLLKMLFFSLLT  185 (273)
Q Consensus       114 ~--~~~~-l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~-----~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~a  185 (273)
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~T~~G~~lrAv~~n~~aA~~~GI~~~~~~~~~f~is~  186 (267)
T pfam02653       107 GGPAGTSTIVDLLGFPGLFLSFGFGVIFLLALLLALLVWLLLRRTRFGRALRAVGENPRAARYAGINVKRTKILAFVLSG  186 (267)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             78877555532554200211257999999999999999999995888469999966599998869988999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf             999999999899999999----------999999998520--898999999999999999999999999579818
Q gi|254780539|r  186 ITIVIGFQTVGILLVIAT----------VITPGATAKLMS--KSFGTYLVSSSLLGATSSFLGSYISYFLDCSPG  248 (273)
Q Consensus       186 l~v~~~v~~vG~llv~al----------lv~Paa~A~~~~--~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g  248 (273)
T Consensus       187 ~lagla----G~l~~~~~~~~~p~~~~~~~~~~~~~~viGG~gs~~G~~~ga~~lg~~~~~~~~----~~g~~~~  253 (267)
T pfam02653       187 ALAGLA----GALLVLSTGSADPNAGLGLGFDAIAAVVLGGAGSPIGAIVGALIIGLLQSLGLT----LLGIPPE  253 (267)
T ss_pred             HHHHHH----HHHHHHHHCCCCCCCCHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHH----HCCCCHH
T ss_conf             999999----999998835648784276998977510168999629999999999999999999----8299889