Query gi|254780539|ref|YP_003064952.1| ABC transporter, membrane spanning protein (iron) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 273
No_of_seqs 134 out of 2518
Neff 7.1
Searched_HMMs 33803
Date Wed Jun 1 17:29:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780539.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2qi9_A Vitamin B12 import sys 99.9 7.9E-22 2.3E-26 141.5 18.6 250 18-269 60-326 (326)
2 >2nq2_A Hypothetical ABC trans 99.7 4.3E-15 1.3E-19 103.3 14.4 154 45-198 4-167 (168)
3 >2nq2_A Hypothetical ABC trans 93.3 0.41 1.2E-05 24.1 7.1 59 183-242 67-135 (139)
4 >2jo1_A Phospholemman; FXYD1, 51.1 13 0.00038 15.6 3.8 34 5-39 5-38 (72)
5 >2zxe_G FXYD10, phospholemman- 49.9 14 0.0004 15.5 3.7 32 6-38 9-40 (74)
6 >2jp3_A FXYD domain-containing 47.4 15 0.00044 15.2 3.9 33 6-39 7-39 (67)
7 >1afo_A Glycophorin A; integra 8.8 96 0.0029 10.6 1.7 17 222-238 11-27 (40)
8 >1tba_A TAFII230, transcriptio 8.1 94 0.0028 10.7 0.0 13 116-128 7-19 (67)
9 >3epo_A Thiamine biosynthesis 7.0 1.2E+02 0.0035 10.1 1.8 19 151-169 16-34 (101)
10 >3iey_A TRNA-splicing endonucl 6.3 1.3E+02 0.0038 9.9 -0.0 18 121-138 3-20 (54)
No 1
>>2qi9_A Vitamin B12 import system permease protein BTUC; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_A* (A:)
Probab=99.90 E-value=7.9e-22 Score=141.54 Aligned_cols=250 Identities=12% Similarity=0.081 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCC-----CCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999987779999996589963248999999999998----314-----41456899999999999986310246
Q gi|254780539|r 18 IWMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIVVCH----RLN-----IPLSVGATISGMLATGIMVKIKETTK 88 (273)
Q Consensus 18 ll~~~li~~~~~~lG~~~v~r~~s~~~~alsH~~l~Giala~----~l~-----~~~~~ga~~~~ll~~~li~~l~~~~~ 88 (273)
.++..++|...+.-|...-..-+.-++|.--+..-.|..++. ++. .....+++..+...........++++
T Consensus 60 ~l~a~l~G~~LavsG~~~Q~~~rNpLa~P~ilGi~sga~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (326)
T 2qi9_A 60 TLAVLLVGAALAISGAVXQALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLSAIAGALIITLILLRFARRH 139 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCGGGGTHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999936987674245402589999999998245402789999999999999999999876213
Q ss_pred CCHHHHH--HHHHHHHHH-HHHHHHHHHCC-CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 5115689--999999999-99997521102-2242112115310027000135788767999999998887888724688
Q gi|254780539|r 89 LREDVAI--AVVYIIFYS-FAMFMLSLSPS-AVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLLFFDER 164 (273)
Q Consensus 89 ~~~d~~i--gi~~~~~~a-lgvllis~~~~-~~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r~l~~~sfD~~ 164 (273)
.+.+..+ |+..+..++ ...++....+. ..+...++.|+....+|+|++...+...+......+.+|++...++|||
T Consensus 140 ~~~~~lil~gi~~~~~~~a~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~lg~~ 219 (326)
T 2qi9_A 140 LSTSRLLLAGVALGIISSALXTWAIYFSTSVDLRQLXYWXXGGFGGVDWRQSWLXLALIPVLLWISSQSRPXNXLALGEI 219 (326)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHTCCCTTCCGGGHHHHTTTHHHHHHHTTCHHHHHHHHTCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56405678999999999999999999840799999999876402546742325678750689999998767665441066
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 99871787104677999999999999999989999999999999999852089899999999999999999999999---
Q gi|254780539|r 165 HAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYISY--- 241 (273)
Q Consensus 165 ~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~~~~G~~lS~--- 241 (273)
.|++.|+|+++++...+.+.++.++.++..+|.+.+.|+ +.|+.+.+...++.++.++.+.+.|......+..++.
T Consensus 220 ~A~slGv~v~~~~~~~lil~~~lta~~vs~vG~I~FvGL-i~p~iar~l~~~~~~~~l~~s~l~Ga~lll~~d~l~r~~~ 298 (326)
T 2qi9_A 220 SARQLGLPLWFWRNVLVAATGWXVGVSVALAGAIGFIGL-VIPHILRLSGLTDHRVLLPGCALAGASALLLADIVARLAL 298 (326)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSSTT-HHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 777068776676689999999999999970358889898-6899999862776546999999999999999999996605
Q ss_pred -HHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf -9579818999999999999999980424
Q gi|254780539|r 242 -FLDCSPGGIIVIIETSLFLLCLFFFSKQ 269 (273)
Q Consensus 242 -~~~lp~g~~Iv~~~~~~f~~~~~~~~~~ 269 (273)
..+.|.|..+.++. ..|++.++.++||
T Consensus 299 ~~~eiPvg~~~~liG-~p~fi~ll~k~~k 326 (326)
T 2qi9_A 299 AAAELPIGVVTATLG-APVFIWLLLKAGR 326 (326)
T ss_dssp TTCCCCHHHHHHHHH-HHHHHHHHSCC--
T ss_pred CCCCCHHHHHHHHHH-HHHHHHHHHHCCC
T ss_conf 666631999999999-9999997620479
No 2
>>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} (A:94-261)
Probab=99.66 E-value=4.3e-15 Score=103.31 Aligned_cols=154 Identities=13% Similarity=0.150 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHH-CCCCCC--HHHHHHHHHHHHHHHHHHHHH-HH--CC
Q ss_conf 248999999999998314414---5689999999999998631-024651--156899999999999999752-11--02
Q gi|254780539|r 45 NGISHAIFPGIVVCHRLNIPL---SVGATISGMLATGIMVKIK-ETTKLR--EDVAIAVVYIIFYSFAMFMLS-LS--PS 115 (273)
Q Consensus 45 ~alsH~~l~Giala~~l~~~~---~~ga~~~~ll~~~li~~l~-~~~~~~--~d~~igi~~~~~~algvllis-~~--~~ 115 (273)
-+.+|.+.+|++++..+..+. ...++..+...+..+..+. ++++.+ +....|+..+..+.....++. .. ++
T Consensus 4 lGvs~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liL~Gi~i~~~~~a~~~~l~~~~~~~~ 83 (168)
T 2nq2_A 4 IGVTSGSAFGGTLAIFFGFSLYGLFTSTILFGFGTLALVFLFSFKFNQRSLLMLILIGMILSGLFSALVSLLQYISDTEE 83 (168)
T ss_dssp TSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHHHHSSCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf 78768999999999987622666789999998999999999999707888411110027899999999999999703077
Q ss_pred -CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -2242112115310027000135788767999999998887888724688998717871046779999999999999999
Q gi|254780539|r 116 -AVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQT 194 (273)
Q Consensus 116 -~~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~ 194 (273)
..+++.|++||....+|+|++...+...+......+.+|+++..++|||.|++.|+|+++.+...+.+.++.++.++..
T Consensus 84 ~~~~~~~wl~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ll~lg~~~A~slGv~v~~~~~~~l~~~~ll~a~~va~ 163 (168)
T 2nq2_A 84 KLPSIVFWLMGSFATSNWEKLLFFFVPFLLCSSILLSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAI 163 (168)
T ss_dssp HHHHHHHHTTCCSTTCCHHHHHHHHHHHHHHHHHHHHTTTGGGGGGSCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998612435788321343243304798888876552554317969984567877899999999999999999851
Q ss_pred HHHH
Q ss_conf 8999
Q gi|254780539|r 195 VGIL 198 (273)
Q Consensus 195 vG~l 198 (273)
+|.+
T Consensus 164 vG~I 167 (168)
T 2nq2_A 164 SGSI 167 (168)
T ss_dssp HCCC
T ss_pred CCHH
T ss_conf 2237
No 3
>>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} (A:1-93,A:262-307)
Probab=93.33 E-value=0.41 Score=24.10 Aligned_cols=59 Identities=22% Similarity=0.338 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999899999----------999999999998520898999999999999999999999999
Q gi|254780539|r 183 LLTITIVIGFQTVGILLV----------IATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYISYF 242 (273)
Q Consensus 183 l~al~v~~~v~~vG~llv----------~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~~~~G~~lS~~ 242 (273)
+.++.+..+.-..|.++- +++ +.|+...+..++++|..++.|.++|..-......+|.-
T Consensus 67 l~a~lvGa~LaiaG~imQ~l~RNPLAdFvGL-ivPHi~r~lvG~~~~~~ip~s~l~Ga~~l~~aD~~~R~ 135 (139)
T 2nq2_A 67 LTALCVGAGLALSGVVLQGIFRNPLVNWVGL-IIPHLSRMLVGANHQSLLPCTMLVGATYMLLVDNVARS 135 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTCCSSTT-HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999998604898988898-79999999618886419999999999999999999856
No 4
>>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens} (A:)
Probab=51.14 E-value=13 Score=15.58 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=22.3
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87463257999999999999999877799999965
Q gi|254780539|r 5 ILEPFTYNYMNTAIWMSTLIGCVCGLLSAYLILKG 39 (273)
Q Consensus 5 ~~~~~~~~f~~~all~~~li~~~~~~lG~~~v~r~ 39 (273)
-.+||.|+| ++-=+.|++.+.+.-++|..+++-+
T Consensus 5 e~dpF~YDY-~tLRigGLi~A~vLfi~GI~iilS~ 38 (72)
T 2jo1_A 5 EHDPFTYDY-QSLQIGGLVIAGILFILGILIVLSR 38 (72)
T ss_dssp HHSGGGCST-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCH-HHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 369863545-8875022378999999999999836
No 5
>>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G* (G:)
Probab=49.92 E-value=14 Score=15.47 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=21.0
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 746325799999999999999987779999996
Q gi|254780539|r 6 LEPFTYNYMNTAIWMSTLIGCVCGLLSAYLILK 38 (273)
Q Consensus 6 ~~~~~~~f~~~all~~~li~~~~~~lG~~~v~r 38 (273)
.++|.|+| ++-=+.|++.+.+.-++|..+++.
T Consensus 9 ~dpF~YDy-~tLRigGLi~A~vLfi~GI~iilS 40 (74)
T 2zxe_G 9 DERFTYDY-YRLRVVGLIVAAVLCVIGIIILLA 40 (74)
T ss_dssp GGGGCCCH-HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 89851444-887520069999999999999993
No 6
>>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus} (A:)
Probab=47.44 E-value=15 Score=15.24 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=22.2
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7463257999999999999999877799999965
Q gi|254780539|r 6 LEPFTYNYMNTAIWMSTLIGCVCGLLSAYLILKG 39 (273)
Q Consensus 6 ~~~~~~~f~~~all~~~li~~~~~~lG~~~v~r~ 39 (273)
-++|.|+| ++-=+.|++.+.+.-++|..+++.+
T Consensus 7 ~dpF~YDy-~tLRigGLi~a~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 7 GSPFYYDW-ESLQLGGLIFGGLLCIAGIALALSG 39 (67)
T ss_dssp TSGGGGGG-HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCH-HHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 89861443-8863000499999999999999847
No 7
>>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} (A:)
Probab=8.78 E-value=96 Score=10.63 Aligned_cols=17 Identities=12% Similarity=0.405 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999
Q gi|254780539|r 222 LVSSSLLGATSSFLGSY 238 (273)
Q Consensus 222 ~~~s~~~g~~~~~~G~~ 238 (273)
.+.=.++|+.+++.|..
T Consensus 11 vi~lII~~vmAGvIGtI 27 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTI 27 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 38999999999899999
No 8
>>1tba_A TAFII230, transcription initiation factor IID 230K chain; complex (transcription factors), TAF, TAFII230, solution structure; NMR {Drosophila melanogaster} (A:)
Probab=8.12 E-value=94 Score=10.68 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=9.4
Q ss_pred CCCCCHHHCCCCC
Q ss_conf 2242112115310
Q gi|254780539|r 116 AVYVENIFLGNTL 128 (273)
Q Consensus 116 ~~~l~~~LfG~il 128 (273)
..++.++|||||-
T Consensus 7 ~~~LtGfLFGNId 19 (67)
T 1tba_A 7 GLDLTGILFGNID 19 (67)
T ss_dssp SCCCTTHHHHCEE
T ss_pred CCCEEEEEECCCC
T ss_conf 7110122442427
No 9
>>3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM superfamily, biosynthetic protein; HET: MP5; 2.10A {Caulobacter crescentus} PDB: 3epm_A* 3epn_A* (A:512-612)
Probab=6.97 E-value=1.2e+02 Score=10.14 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=15.1
Q ss_pred HHHHHHHHHHCCHHHHHHC
Q ss_conf 9888788872468899871
Q gi|254780539|r 151 MKWKDFVLLFFDERHAHSV 169 (273)
Q Consensus 151 ~~~r~l~~~sfD~~~A~~~ 169 (273)
+-|.+..-.++|||.|+..
T Consensus 16 lDWe~qf~LalDPekAr~~ 34 (101)
T 3epo_A 16 FRWEDQFNLGLDPETARKF 34 (101)
T ss_dssp TCHHHHHHTSSCHHHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHH
T ss_conf 8999999870698999998
No 10
>>3iey_A TRNA-splicing endonuclease; protein heterodimer, endonuclease, hydrolase, nuclease, tRNA processing, hydrolase/RNA binding protein complex; 2.11A {Nanoarchaeum equitans} (A:1-54)
Probab=6.27 E-value=1.3e+02 Score=9.89 Aligned_cols=18 Identities=11% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHCCCCCCCCHHHHHHH
Q ss_conf 121153100270001357
Q gi|254780539|r 121 NIFLGNTLSMSRSDTIQV 138 (273)
Q Consensus 121 ~~LfG~il~i~~~di~~~ 138 (273)
+|||||-..++..++..+
T Consensus 3 gylfgnrvlvddkelpli 20 (54)
T 3iey_A 3 GYLFGNRVLVDDKELPLI 20 (54)
T ss_dssp CEEETTEEECC--CEEHH
T ss_pred CCCCCCCCCCCCCCCCHH
T ss_conf 412486365663453899
Done!