Query gi|254780539|ref|YP_003064952.1| ABC transporter, membrane spanning protein (iron) [Candidatus Liberibacter asiaticus str. psy62] Match_columns 273 No_of_seqs 134 out of 2518 Neff 7.1 Searched_HMMs 13730 Date Wed Jun 1 10:14:45 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780539.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1l7va_ f.22.1.1 (A:) ABC tran 99.9 1.4E-19 9.9E-24 126.6 23.0 241 18-265 60-322 (324) 2 d1tbaa_ a.15.1.1 (A:) TAF(II)2 8.6 38 0.0028 10.7 0.2 13 116-128 7-19 (67) 3 d1q1ha_ a.4.5.41 (A:) Transcri 7.3 46 0.0033 10.2 2.1 26 159-184 33-58 (88) 4 d2nuga1 a.149.1.1 (A:3-150) RN 7.0 23 0.0017 11.9 -1.5 47 1-50 1-47 (148) 5 d1xp8a1 c.37.1.11 (A:15-282) R 5.5 62 0.0045 9.5 1.6 17 160-176 96-112 (268) 6 d1mo6a1 c.37.1.11 (A:1-269) Re 4.2 88 0.0064 8.6 1.4 16 160-175 99-114 (269) 7 d1v54l_ f.23.6.1 (L:) Mitochon 3.9 95 0.0069 8.4 4.2 27 15-41 17-43 (46) 8 d1vega_ a.5.2.1 (A:) NEDD8 ult 3.8 98 0.0072 8.4 2.0 15 154-168 34-48 (83) 9 d1ugja_ b.41.1.3 (A:) RIKEN cD 3.8 63 0.0046 9.4 -1.0 16 39-54 19-34 (141) 10 d1v54g_ f.23.2.1 (G:) Mitochon 3.7 1E+02 0.0074 8.3 2.5 19 36-60 15-33 (84) No 1 >d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]} Probab=99.87 E-value=1.4e-19 Score=126.62 Aligned_cols=241 Identities=14% Similarity=0.162 Sum_probs=173.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999877799999965899632--------4899999999999831441------4568999999999999863 Q gi|254780539|r 18 IWMSTLIGCVCGLLSAYLILKGWSSIGN--------GISHAIFPGIVVCHRLNIP------LSVGATISGMLATGIMVKI 83 (273) Q Consensus 18 ll~~~li~~~~~~lG~~~v~r~~s~~~~--------alsH~~l~Giala~~l~~~------~~~ga~~~~ll~~~li~~l 83 (273) .+++.++|...+.-|... |....+ +++..+-.|++++..++.. ....++..+.......... T Consensus 60 ~l~a~l~Ga~La~sG~~l----Q~~~rNpLA~P~ilGissGA~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (324) T d1l7va_ 60 TLAVLLVGAALAISGAVM----QALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLCAIAGALIITLILLRF 135 (324) T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHTCTTCCTTTTTHHHHHHHHHHHHHHTSCTTCCHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH----HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999----9981798878367875428899999999723322578899999999999999999998 Q ss_pred HCCCCCCHH-HHHHHHHHHHHHHHHH-HHHHHC-C-CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 102465115-6899999999999999-752110-2-22421121153100270001357887679999999988878887 Q gi|254780539|r 84 KETTKLRED-VAIAVVYIIFYSFAMF-MLSLSP-S-AVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLL 159 (273) Q Consensus 84 ~~~~~~~~d-~~igi~~~~~~algvl-lis~~~-~-~~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r~l~~~ 159 (273) ++++..+.. ...|+..+..++...- +....+ . ..+...|+.|+....+|+|++...+...+.. ...+..|+++.. T Consensus 136 ~~~~~~~~~liL~Gi~i~~~~~a~~~~l~~~~~~~~~~~~~~w~~Gs~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L 214 (324) T d1l7va_ 136 ARRHLSTSRLLLAGVALGIICSALMTWAIYFSTSVDLRQLMYWMMGGFGGVDWRQSWLMLALIPVLL-WICCQSRPMNML 214 (324) T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHTCCCTTCCGGGHHHHHHHHHHHH-HHHHCHHHHHHH T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHH T ss_conf 6146881367788999999999999999995479999999999765004453203577887518999-999998446655 Q ss_pred HCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 24688998717871046779999999999999999899999999999999998520898999999999999999999999 Q gi|254780539|r 160 FFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYI 239 (273) Q Consensus 160 sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~~~~G~~l 239 (273) +.|||.|++.|+|+++++...+...++.++.++..+|.+-+.++ +.|+.+.+...+++|+.++.|.++|......+..+ T Consensus 215 ~lgd~~A~sLGv~v~~~r~~~l~~~~ll~a~~va~~G~I~FvGL-i~PhiaR~l~g~~~~~~lp~s~l~Ga~lll~aD~l 293 (324) T d1l7va_ 215 ALGEISARQLGLPLWFWRNVLVAATGWMVGVSVALAGAIGFIGL-VIPHILRLCGLTDHRVLLPGCALAGASALLLADIV 293 (324) T ss_dssp HHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSSSS-HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHH T ss_pred HCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 30368887068666777799999999999999972364455587-57999998607775179999999999999999999 Q ss_pred HHHH----CCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9995----7981899999999999999998 Q gi|254780539|r 240 SYFL----DCSPGGIIVIIETSLFLLCLFF 265 (273) Q Consensus 240 S~~~----~lp~g~~Iv~~~~~~f~~~~~~ 265 (273) +... ++|.|- ++.+.+..|++.++. T Consensus 294 ~r~i~~p~eiPvGv-italiG~P~fi~Ll~ 322 (324) T d1l7va_ 294 ARLALAAAELPIGV-VTATLGAPVFIWLLL 322 (324) T ss_dssp HHHSCSSSCCCHHH-HHHHHHHHHHHHHHH T ss_pred HHHHCCCCCCHHHH-HHHHHHHHHHHHHHH T ss_conf 97604665632999-999999999999998 No 2 >d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=8.64 E-value=38 Score=10.70 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=9.7 Q ss_pred CCCCCHHHCCCCC Q ss_conf 2242112115310 Q gi|254780539|r 116 AVYVENIFLGNTL 128 (273) Q Consensus 116 ~~~l~~~LfG~il 128 (273) ..++.++||||+- T Consensus 7 ~~~LtGfLFGNId 19 (67) T d1tbaa_ 7 GLDLTGILFGNID 19 (67) T ss_dssp SCCCTTHHHHCEE T ss_pred CCCEEEEEECCCC T ss_conf 7110122441427 No 3 >d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Probab=7.27 E-value=46 Score=10.23 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=20.8 Q ss_pred HHCCHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 72468899871787104677999999 Q gi|254780539|r 159 LFFDERHAHSVGINVKLLKMLFFSLL 184 (273) Q Consensus 159 ~sfD~~~A~~~Gi~v~~~~~l~l~l~ 184 (273) ..-|++.|+..|++.+-.+-.++.+- T Consensus 33 evtDe~iA~~tgi~in~VRk~Ly~L~ 58 (88) T d1q1ha_ 33 EMTDEEIANQLNIKVNDVRKKLNLLE 58 (88) T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 67899999996996999999999998 No 4 >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Probab=7.05 E-value=23 Score=11.95 Aligned_cols=47 Identities=11% Similarity=0.213 Sum_probs=27.4 Q ss_pred CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 95688746325799999999999999987779999996589963248999 Q gi|254780539|r 1 MINQILEPFTYNYMNTAIWMSTLIGCVCGLLSAYLILKGWSSIGNGISHA 50 (273) Q Consensus 1 m~~~~~~~~~~~f~~~all~~~li~~~~~~lG~~~v~r~~s~~~~alsH~ 50 (273) |++.+-+.+.|.|-...++.-.+....+.-- -...|..|+||++-+. T Consensus 1 ~l~~le~~igy~F~n~~LL~~Alth~S~~~~---~~~erLeflGDavl~~ 47 (148) T d2nuga1 1 MLEQLEKKLGYTFKDKSLLEKALTHVSYSKK---EHYETLEFLGDALVNF 47 (148) T ss_dssp CHHHHHHHHTCCCSSHHHHHHHHBCTTTCSS---SCSHHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC---CCHHHHHHHHHHHHHH T ss_conf 9889999989862888999998668576887---5509999999888754 No 5 >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Probab=5.52 E-value=62 Score=9.49 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=12.3 Q ss_pred HCCHHHHHHCCCCCHHH Q ss_conf 24688998717871046 Q gi|254780539|r 160 FFDERHAHSVGINVKLL 176 (273) Q Consensus 160 sfD~~~A~~~Gi~v~~~ 176 (273) +|||+.|+..|+++..+ T Consensus 96 ~~~~~~a~~~Gvd~d~i 112 (268) T d1xp8a1 96 ALDPVYARALGVNTDEL 112 (268) T ss_dssp CCCHHHHHHTTCCGGGC T ss_pred CCCHHHHHHHCCCCHHE T ss_conf 58999999828981237 No 6 >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Probab=4.16 E-value=88 Score=8.61 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=9.7 Q ss_pred HCCHHHHHHCCCCCHH Q ss_conf 2468899871787104 Q gi|254780539|r 160 FFDERHAHSVGINVKL 175 (273) Q Consensus 160 sfD~~~A~~~Gi~v~~ 175 (273) +||||.|+..|+++.. T Consensus 99 ~~~~e~a~~~GvD~d~ 114 (269) T d1mo6a1 99 ALDPDYAKKLGVDTDS 114 (269) T ss_dssp CCCHHHHHHHTCCGGG T ss_pred CCCHHHHHHHCCCHHH T ss_conf 6799999980998899 No 7 >d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]} Probab=3.92 E-value=95 Score=8.43 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=17.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999987779999996589 Q gi|254780539|r 15 NTAIWMSTLIGCVCGLLSAYLILKGWS 41 (273) Q Consensus 15 ~~all~~~li~~~~~~lG~~~v~r~~s 41 (273) ++.+++...+-.-+|.--+|++.|.|- T Consensus 17 k~rLla~m~~~fGsgfa~PF~ivRhqL 43 (46) T d1v54l_ 17 KWRLLAMMTLFFGSGFAAPFFIVRHQL 43 (46) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 899999999998021344299999998 No 8 >d1vega_ a.5.2.1 (A:) NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculus) [TaxId: 10090]} Probab=3.82 E-value=98 Score=8.35 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=0.0 Q ss_pred HHHHHHHCCHHHHHH Q ss_conf 878887246889987 Q gi|254780539|r 154 KDFVLLFFDERHAHS 168 (273) Q Consensus 154 r~l~~~sfD~~~A~~ 168 (273) .++++..||++.|++ T Consensus 34 dqLvYMGF~~~~Ae~ 48 (83) T d1vega_ 34 NQLVYMGFDTVVAEA 48 (83) T ss_dssp HHHHHHSCCHHHHHH T ss_pred HHHHHHCCCHHHHHH T ss_conf 999983423888999 No 9 >d1ugja_ b.41.1.3 (A:) RIKEN cDNA 2310057j16 protein (KIAA1543) {Mouse (Mus musculus) [TaxId: 10090]} Probab=3.80 E-value=63 Score=9.44 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 5899632489999999 Q gi|254780539|r 39 GWSSIGNGISHAIFPG 54 (273) Q Consensus 39 ~~s~~~~alsH~~l~G 54 (273) +...+-+|+.|..|+| T Consensus 19 Nr~iI~nAL~~~~L~G 34 (141) T d1ugja_ 19 NKFIIHNALSHCCLAG 34 (141) T ss_dssp CHHHHHHHHHHTTTCS T ss_pred HHHHHHHHHHHHCCCC T ss_conf 2999999999852788 No 10 >d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]} Probab=3.70 E-value=1e+02 Score=8.26 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9965899632489999999999983 Q gi|254780539|r 36 ILKGWSSIGNGISHAIFPGIVVCHR 60 (273) Q Consensus 36 v~r~~s~~~~alsH~~l~Giala~~ 60 (273) .|||.+|+ +++|+++++.+ T Consensus 15 lWkkis~~------va~P~i~l~~~ 33 (84) T d1v54g_ 15 TWRFLTFG------LALPSVALCTL 33 (84) T ss_dssp HHHHHHHH------THHHHHHHHHH T ss_pred HHHHHHHH------HHHHHHHHHHH T ss_conf 99988989------99999999999 Done!