Query         gi|254780539|ref|YP_003064952.1| ABC transporter, membrane spanning protein (iron) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 273
No_of_seqs    134 out of 2518
Neff          7.1 
Searched_HMMs 13730
Date          Wed Jun  1 10:14:45 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780539.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1l7va_ f.22.1.1 (A:) ABC tran  99.9 1.4E-19 9.9E-24  126.6  23.0  241   18-265    60-322 (324)
  2 d1tbaa_ a.15.1.1 (A:) TAF(II)2   8.6      38  0.0028   10.7   0.2   13  116-128     7-19  (67)
  3 d1q1ha_ a.4.5.41 (A:) Transcri   7.3      46  0.0033   10.2   2.1   26  159-184    33-58  (88)
  4 d2nuga1 a.149.1.1 (A:3-150) RN   7.0      23  0.0017   11.9  -1.5   47    1-50      1-47  (148)
  5 d1xp8a1 c.37.1.11 (A:15-282) R   5.5      62  0.0045    9.5   1.6   17  160-176    96-112 (268)
  6 d1mo6a1 c.37.1.11 (A:1-269) Re   4.2      88  0.0064    8.6   1.4   16  160-175    99-114 (269)
  7 d1v54l_ f.23.6.1 (L:) Mitochon   3.9      95  0.0069    8.4   4.2   27   15-41     17-43  (46)
  8 d1vega_ a.5.2.1 (A:) NEDD8 ult   3.8      98  0.0072    8.4   2.0   15  154-168    34-48  (83)
  9 d1ugja_ b.41.1.3 (A:) RIKEN cD   3.8      63  0.0046    9.4  -1.0   16   39-54     19-34  (141)
 10 d1v54g_ f.23.2.1 (G:) Mitochon   3.7   1E+02  0.0074    8.3   2.5   19   36-60     15-33  (84)

No 1  
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=99.87  E-value=1.4e-19  Score=126.62  Aligned_cols=241  Identities=14%  Similarity=0.162  Sum_probs=173.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999877799999965899632--------4899999999999831441------4568999999999999863
Q gi|254780539|r   18 IWMSTLIGCVCGLLSAYLILKGWSSIGN--------GISHAIFPGIVVCHRLNIP------LSVGATISGMLATGIMVKI   83 (273)
Q Consensus        18 ll~~~li~~~~~~lG~~~v~r~~s~~~~--------alsH~~l~Giala~~l~~~------~~~ga~~~~ll~~~li~~l   83 (273)
                      .+++.++|...+.-|...    |....+        +++..+-.|++++..++..      ....++..+..........
T Consensus        60 ~l~a~l~Ga~La~sG~~l----Q~~~rNpLA~P~ilGissGA~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (324)
T d1l7va_          60 TLAVLLVGAALAISGAVM----QALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLCAIAGALIITLILLRF  135 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHH----HHHHTCTTCCTTTTTHHHHHHHHHHHHHHTSCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999----9981798878367875428899999999723322578899999999999999999998


Q ss_pred             HCCCCCCHH-HHHHHHHHHHHHHHHH-HHHHHC-C-CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             102465115-6899999999999999-752110-2-22421121153100270001357887679999999988878887
Q gi|254780539|r   84 KETTKLRED-VAIAVVYIIFYSFAMF-MLSLSP-S-AVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLL  159 (273)
Q Consensus        84 ~~~~~~~~d-~~igi~~~~~~algvl-lis~~~-~-~~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r~l~~~  159 (273)
                      ++++..+.. ...|+..+..++...- +....+ . ..+...|+.|+....+|+|++...+...+.. ...+..|+++..
T Consensus       136 ~~~~~~~~~liL~Gi~i~~~~~a~~~~l~~~~~~~~~~~~~~w~~Gs~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L  214 (324)
T d1l7va_         136 ARRHLSTSRLLLAGVALGIICSALMTWAIYFSTSVDLRQLMYWMMGGFGGVDWRQSWLMLALIPVLL-WICCQSRPMNML  214 (324)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHTCCCTTCCGGGHHHHHHHHHHHH-HHHHCHHHHHHH
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf             6146881367788999999999999999995479999999999765004453203577887518999-999998446655


Q ss_pred             HCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             24688998717871046779999999999999999899999999999999998520898999999999999999999999
Q gi|254780539|r  160 FFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYI  239 (273)
Q Consensus       160 sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~~~~G~~l  239 (273)
                      +.|||.|++.|+|+++++...+...++.++.++..+|.+-+.++ +.|+.+.+...+++|+.++.|.++|......+..+
T Consensus       215 ~lgd~~A~sLGv~v~~~r~~~l~~~~ll~a~~va~~G~I~FvGL-i~PhiaR~l~g~~~~~~lp~s~l~Ga~lll~aD~l  293 (324)
T d1l7va_         215 ALGEISARQLGLPLWFWRNVLVAATGWMVGVSVALAGAIGFIGL-VIPHILRLCGLTDHRVLLPGCALAGASALLLADIV  293 (324)
T ss_dssp             HHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSSSS-HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             30368887068666777799999999999999972364455587-57999998607775179999999999999999999


Q ss_pred             HHHH----CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9995----7981899999999999999998
Q gi|254780539|r  240 SYFL----DCSPGGIIVIIETSLFLLCLFF  265 (273)
Q Consensus       240 S~~~----~lp~g~~Iv~~~~~~f~~~~~~  265 (273)
                      +...    ++|.|- ++.+.+..|++.++.
T Consensus       294 ~r~i~~p~eiPvGv-italiG~P~fi~Ll~  322 (324)
T d1l7va_         294 ARLALAAAELPIGV-VTATLGAPVFIWLLL  322 (324)
T ss_dssp             HHHSCSSSCCCHHH-HHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCHHHH-HHHHHHHHHHHHHHH
T ss_conf             97604665632999-999999999999998


No 2  
>d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=8.64  E-value=38  Score=10.70  Aligned_cols=13  Identities=23%  Similarity=0.396  Sum_probs=9.7

Q ss_pred             CCCCCHHHCCCCC
Q ss_conf             2242112115310
Q gi|254780539|r  116 AVYVENIFLGNTL  128 (273)
Q Consensus       116 ~~~l~~~LfG~il  128 (273)
                      ..++.++||||+-
T Consensus         7 ~~~LtGfLFGNId   19 (67)
T d1tbaa_           7 GLDLTGILFGNID   19 (67)
T ss_dssp             SCCCTTHHHHCEE
T ss_pred             CCCEEEEEECCCC
T ss_conf             7110122441427


No 3  
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=7.27  E-value=46  Score=10.23  Aligned_cols=26  Identities=23%  Similarity=0.170  Sum_probs=20.8

Q ss_pred             HHCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             72468899871787104677999999
Q gi|254780539|r  159 LFFDERHAHSVGINVKLLKMLFFSLL  184 (273)
Q Consensus       159 ~sfD~~~A~~~Gi~v~~~~~l~l~l~  184 (273)
                      ..-|++.|+..|++.+-.+-.++.+-
T Consensus        33 evtDe~iA~~tgi~in~VRk~Ly~L~   58 (88)
T d1q1ha_          33 EMTDEEIANQLNIKVNDVRKKLNLLE   58 (88)
T ss_dssp             CBCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             67899999996996999999999998


No 4  
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]}
Probab=7.05  E-value=23  Score=11.95  Aligned_cols=47  Identities=11%  Similarity=0.213  Sum_probs=27.4

Q ss_pred             CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             95688746325799999999999999987779999996589963248999
Q gi|254780539|r    1 MINQILEPFTYNYMNTAIWMSTLIGCVCGLLSAYLILKGWSSIGNGISHA   50 (273)
Q Consensus         1 m~~~~~~~~~~~f~~~all~~~li~~~~~~lG~~~v~r~~s~~~~alsH~   50 (273)
                      |++.+-+.+.|.|-...++.-.+....+.--   -...|..|+||++-+.
T Consensus         1 ~l~~le~~igy~F~n~~LL~~Alth~S~~~~---~~~erLeflGDavl~~   47 (148)
T d2nuga1           1 MLEQLEKKLGYTFKDKSLLEKALTHVSYSKK---EHYETLEFLGDALVNF   47 (148)
T ss_dssp             CHHHHHHHHTCCCSSHHHHHHHHBCTTTCSS---SCSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC---CCHHHHHHHHHHHHHH
T ss_conf             9889999989862888999998668576887---5509999999888754


No 5  
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=5.52  E-value=62  Score=9.49  Aligned_cols=17  Identities=29%  Similarity=0.409  Sum_probs=12.3

Q ss_pred             HCCHHHHHHCCCCCHHH
Q ss_conf             24688998717871046
Q gi|254780539|r  160 FFDERHAHSVGINVKLL  176 (273)
Q Consensus       160 sfD~~~A~~~Gi~v~~~  176 (273)
                      +|||+.|+..|+++..+
T Consensus        96 ~~~~~~a~~~Gvd~d~i  112 (268)
T d1xp8a1          96 ALDPVYARALGVNTDEL  112 (268)
T ss_dssp             CCCHHHHHHTTCCGGGC
T ss_pred             CCCHHHHHHHCCCCHHE
T ss_conf             58999999828981237


No 6  
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=4.16  E-value=88  Score=8.61  Aligned_cols=16  Identities=19%  Similarity=0.347  Sum_probs=9.7

Q ss_pred             HCCHHHHHHCCCCCHH
Q ss_conf             2468899871787104
Q gi|254780539|r  160 FFDERHAHSVGINVKL  175 (273)
Q Consensus       160 sfD~~~A~~~Gi~v~~  175 (273)
                      +||||.|+..|+++..
T Consensus        99 ~~~~e~a~~~GvD~d~  114 (269)
T d1mo6a1          99 ALDPDYAKKLGVDTDS  114 (269)
T ss_dssp             CCCHHHHHHHTCCGGG
T ss_pred             CCCHHHHHHHCCCHHH
T ss_conf             6799999980998899


No 7  
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.92  E-value=95  Score=8.43  Aligned_cols=27  Identities=7%  Similarity=0.084  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999987779999996589
Q gi|254780539|r   15 NTAIWMSTLIGCVCGLLSAYLILKGWS   41 (273)
Q Consensus        15 ~~all~~~li~~~~~~lG~~~v~r~~s   41 (273)
                      ++.+++...+-.-+|.--+|++.|.|-
T Consensus        17 k~rLla~m~~~fGsgfa~PF~ivRhqL   43 (46)
T d1v54l_          17 KWRLLAMMTLFFGSGFAAPFFIVRHQL   43 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             899999999998021344299999998


No 8  
>d1vega_ a.5.2.1 (A:) NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.82  E-value=98  Score=8.35  Aligned_cols=15  Identities=27%  Similarity=0.361  Sum_probs=0.0

Q ss_pred             HHHHHHHCCHHHHHH
Q ss_conf             878887246889987
Q gi|254780539|r  154 KDFVLLFFDERHAHS  168 (273)
Q Consensus       154 r~l~~~sfD~~~A~~  168 (273)
                      .++++..||++.|++
T Consensus        34 dqLvYMGF~~~~Ae~   48 (83)
T d1vega_          34 NQLVYMGFDTVVAEA   48 (83)
T ss_dssp             HHHHHHSCCHHHHHH
T ss_pred             HHHHHHCCCHHHHHH
T ss_conf             999983423888999


No 9  
>d1ugja_ b.41.1.3 (A:) RIKEN cDNA 2310057j16 protein (KIAA1543) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.80  E-value=63  Score=9.44  Aligned_cols=16  Identities=31%  Similarity=0.387  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             5899632489999999
Q gi|254780539|r   39 GWSSIGNGISHAIFPG   54 (273)
Q Consensus        39 ~~s~~~~alsH~~l~G   54 (273)
                      +...+-+|+.|..|+|
T Consensus        19 Nr~iI~nAL~~~~L~G   34 (141)
T d1ugja_          19 NKFIIHNALSHCCLAG   34 (141)
T ss_dssp             CHHHHHHHHHHTTTCS
T ss_pred             HHHHHHHHHHHHCCCC
T ss_conf             2999999999852788


No 10 
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.70  E-value=1e+02  Score=8.26  Aligned_cols=19  Identities=11%  Similarity=0.207  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9965899632489999999999983
Q gi|254780539|r   36 ILKGWSSIGNGISHAIFPGIVVCHR   60 (273)
Q Consensus        36 v~r~~s~~~~alsH~~l~Giala~~   60 (273)
                      .|||.+|+      +++|+++++.+
T Consensus        15 lWkkis~~------va~P~i~l~~~   33 (84)
T d1v54g_          15 TWRFLTFG------LALPSVALCTL   33 (84)
T ss_dssp             HHHHHHHH------THHHHHHHHHH
T ss_pred             HHHHHHHH------HHHHHHHHHHH
T ss_conf             99988989------99999999999


Done!