RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780539|ref|YP_003064952.1| ABC transporter, membrane
spanning protein (iron) [Candidatus Liberibacter asiaticus str. psy62]
         (273 letters)



>gnl|CDD|163482 TIGR03770, anch_rpt_perm, anchored repeat-type ABC transporter,
           permease subunit.  This protein family is the permease
           subunit of binding protein-dependent ABC transporter
           complex that strictly co-occurs with TIGR03769. TIGRFAMs
           model TIGR03769 describes a protein domain that occurs
           singly or as one of up to three repeats in proteins of a
           number of Actinobacteria, including Propionibacterium
           acnes KPA171202. The TIGR03769 domain occurs both in the
           adjacent gene for the substrate-binding protein and in
           additional (often nearby) proteins, often with
           LPXTG-like sortase recognition signals. Homologous
           permease subunits outside the scope of this family
           include manganese transporter MntB in Synechocystis sp.
           PCC 6803 and chelated iron transporter subunits. The
           function of this transporter complex is unknown.
          Length = 270

 Score =  126 bits (318), Expect = 6e-30
 Identities = 73/254 (28%), Positives = 141/254 (55%), Gaps = 1/254 (0%)

Query: 13  YMNTAIWMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIVVCHRLNIPLSVGATIS 72
           ++  A+ ++ L   VCG++  +++L+G + IG+ ++HA+FPG+ V   L   L +G  ++
Sbjct: 16  FLPKALLVAVLSSIVCGVVGTHVVLRGMAFIGDAVAHAVFPGLAVAFALQGSLLLGGAVA 75

Query: 73  GMLATGIMVKIKETTKLREDVAIAVVYIIFYSFAMFMLSLSPS-AVYVENIFLGNTLSMS 131
           G+    ++    +  +L+ED  I + ++  ++  + ++S  P     ++    G+   + 
Sbjct: 76  GVATAILIAVFSQNRRLKEDSIIGIFFVAAFALGLVIISRVPGYTGSLQQFLFGSITGIP 135

Query: 132 RSDTIQVLIITFSVACIVYMKWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIG 191
            SD +   ++   V   V    K+ V +  D   A ++G+ V LL ++ + L+T  +VI 
Sbjct: 136 DSDIVVAAVVGAVVLLAVAALHKELVAVSLDRETARAMGLPVFLLDLVLYVLVTAAVVIS 195

Query: 192 FQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGGII 251
            QT+G +LV+A +ITP ATA+L++   G  +  S ++G   SFLG Y+S+ +D   GG I
Sbjct: 196 VQTIGNILVLALLITPAATARLLTDRLGVMMALSPVIGGVGSFLGLYLSWSIDVPTGGTI 255

Query: 252 VIIETSLFLLCLFF 265
           V++ T++FL   F 
Sbjct: 256 VLVLTAVFLASWFV 269


>gnl|CDD|181938 PRK09543, znuB, high-affinity zinc transporter membrane component;
           Reviewed.
          Length = 261

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 52/242 (21%), Positives = 114/242 (47%), Gaps = 1/242 (0%)

Query: 23  LIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIVVCHRLNIPLSVGATISGMLATGIMVK 82
           ++ C  G L ++++ +  S  G+ ++HA   G+     L++          +L  G +V 
Sbjct: 14  MLACAAGPLGSFVVWRRMSYFGDTLAHASLLGVAFGLLLDVNPFYAVIAVTLLLAGGLVW 73

Query: 83  IKETTKLREDVAIAVVYIIFYSFAMFMLSL-SPSAVYVENIFLGNTLSMSRSDTIQVLII 141
           +++  +L  D  + ++     S  + ++SL S   V +     G+ L+++  D I + I 
Sbjct: 74  LEKRPQLAIDTLLGIMAHSALSLGLVVVSLMSNVRVDLMAYLFGDLLAVTPEDLISIAIG 133

Query: 142 TFSVACIVYMKWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVI 201
              V  I++ +W++ + +      A   G+ ++ +K+L   +  +TI +  + VG L++ 
Sbjct: 134 VVIVLAILFWQWRNLLSMTISPDLAFVDGVKLQRVKLLLMLVTALTIGVAMKFVGALIIT 193

Query: 202 ATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIETSLFLL 261
           + +I P ATA+  +++       + L+G  +   G   S F D   G  +V+    LF+L
Sbjct: 194 SLLIIPAATARRFARTPEQMAGVAVLVGMLAVTGGLTFSAFYDTPAGPSVVLCAALLFIL 253

Query: 262 CL 263
            +
Sbjct: 254 SM 255


>gnl|CDD|178232 PLN02625, PLN02625, uroporphyrin-III C-methyltransferase.
          Length = 263

 Score = 27.3 bits (61), Expect = 4.0
 Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 4/25 (16%)

Query: 45  NGISHAIFPGIV----VCHRLNIPL 65
           NGI   + PGI         L IPL
Sbjct: 119 NGIPVTVVPGITAAIGAPAELGIPL 143


>gnl|CDD|184313 PRK13766, PRK13766, Hef nuclease; Provisional.
          Length = 773

 Score = 26.8 bits (60), Expect = 6.9
 Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%)

Query: 154 KDFVLLFFDERHAHSVG 170
           +D  LL FDE H  +VG
Sbjct: 130 EDVSLLIFDEAH-RAVG 145


>gnl|CDD|177564 PHA03237, PHA03237, envelope glycoprotein M; Provisional.
          Length = 424

 Score = 26.2 bits (58), Expect = 9.8
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 100 IIFYSFAMFMLSLSPSAVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVL 158
           +I     ++ LSL  +++ +  + L N+  ++   TI V I  F    ++Y+   +FV+
Sbjct: 224 MINLVSGVYGLSLIIASLMLGML-LANSFHLTLWQTITVAIGVFVALTLMYLLIVEFVV 281


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.330    0.142    0.419 

Gapped
Lambda     K      H
   0.267   0.0705    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,324,345
Number of extensions: 275516
Number of successful extensions: 996
Number of sequences better than 10.0: 1
Number of HSP's gapped: 989
Number of HSP's successfully gapped: 78
Length of query: 273
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 181
Effective length of database: 4,006,537
Effective search space: 725183197
Effective search space used: 725183197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.4 bits)