RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780539|ref|YP_003064952.1| ABC transporter, membrane spanning protein (iron) [Candidatus Liberibacter asiaticus str. psy62] (273 letters) >gnl|CDD|163482 TIGR03770, anch_rpt_perm, anchored repeat-type ABC transporter, permease subunit. This protein family is the permease subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in the adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous permease subunits outside the scope of this family include manganese transporter MntB in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. Length = 270 Score = 126 bits (318), Expect = 6e-30 Identities = 73/254 (28%), Positives = 141/254 (55%), Gaps = 1/254 (0%) Query: 13 YMNTAIWMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIVVCHRLNIPLSVGATIS 72 ++ A+ ++ L VCG++ +++L+G + IG+ ++HA+FPG+ V L L +G ++ Sbjct: 16 FLPKALLVAVLSSIVCGVVGTHVVLRGMAFIGDAVAHAVFPGLAVAFALQGSLLLGGAVA 75 Query: 73 GMLATGIMVKIKETTKLREDVAIAVVYIIFYSFAMFMLSLSPS-AVYVENIFLGNTLSMS 131 G+ ++ + +L+ED I + ++ ++ + ++S P ++ G+ + Sbjct: 76 GVATAILIAVFSQNRRLKEDSIIGIFFVAAFALGLVIISRVPGYTGSLQQFLFGSITGIP 135 Query: 132 RSDTIQVLIITFSVACIVYMKWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIG 191 SD + ++ V V K+ V + D A ++G+ V LL ++ + L+T +VI Sbjct: 136 DSDIVVAAVVGAVVLLAVAALHKELVAVSLDRETARAMGLPVFLLDLVLYVLVTAAVVIS 195 Query: 192 FQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGGII 251 QT+G +LV+A +ITP ATA+L++ G + S ++G SFLG Y+S+ +D GG I Sbjct: 196 VQTIGNILVLALLITPAATARLLTDRLGVMMALSPVIGGVGSFLGLYLSWSIDVPTGGTI 255 Query: 252 VIIETSLFLLCLFF 265 V++ T++FL F Sbjct: 256 VLVLTAVFLASWFV 269 >gnl|CDD|181938 PRK09543, znuB, high-affinity zinc transporter membrane component; Reviewed. Length = 261 Score = 47.4 bits (113), Expect = 4e-06 Identities = 52/242 (21%), Positives = 114/242 (47%), Gaps = 1/242 (0%) Query: 23 LIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIVVCHRLNIPLSVGATISGMLATGIMVK 82 ++ C G L ++++ + S G+ ++HA G+ L++ +L G +V Sbjct: 14 MLACAAGPLGSFVVWRRMSYFGDTLAHASLLGVAFGLLLDVNPFYAVIAVTLLLAGGLVW 73 Query: 83 IKETTKLREDVAIAVVYIIFYSFAMFMLSL-SPSAVYVENIFLGNTLSMSRSDTIQVLII 141 +++ +L D + ++ S + ++SL S V + G+ L+++ D I + I Sbjct: 74 LEKRPQLAIDTLLGIMAHSALSLGLVVVSLMSNVRVDLMAYLFGDLLAVTPEDLISIAIG 133 Query: 142 TFSVACIVYMKWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVI 201 V I++ +W++ + + A G+ ++ +K+L + +TI + + VG L++ Sbjct: 134 VVIVLAILFWQWRNLLSMTISPDLAFVDGVKLQRVKLLLMLVTALTIGVAMKFVGALIIT 193 Query: 202 ATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIETSLFLL 261 + +I P ATA+ +++ + L+G + G S F D G +V+ LF+L Sbjct: 194 SLLIIPAATARRFARTPEQMAGVAVLVGMLAVTGGLTFSAFYDTPAGPSVVLCAALLFIL 253 Query: 262 CL 263 + Sbjct: 254 SM 255 >gnl|CDD|178232 PLN02625, PLN02625, uroporphyrin-III C-methyltransferase. Length = 263 Score = 27.3 bits (61), Expect = 4.0 Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 4/25 (16%) Query: 45 NGISHAIFPGIV----VCHRLNIPL 65 NGI + PGI L IPL Sbjct: 119 NGIPVTVVPGITAAIGAPAELGIPL 143 >gnl|CDD|184313 PRK13766, PRK13766, Hef nuclease; Provisional. Length = 773 Score = 26.8 bits (60), Expect = 6.9 Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%) Query: 154 KDFVLLFFDERHAHSVG 170 +D LL FDE H +VG Sbjct: 130 EDVSLLIFDEAH-RAVG 145 >gnl|CDD|177564 PHA03237, PHA03237, envelope glycoprotein M; Provisional. Length = 424 Score = 26.2 bits (58), Expect = 9.8 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 100 IIFYSFAMFMLSLSPSAVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVL 158 +I ++ LSL +++ + + L N+ ++ TI V I F ++Y+ +FV+ Sbjct: 224 MINLVSGVYGLSLIIASLMLGML-LANSFHLTLWQTITVAIGVFVALTLMYLLIVEFVV 281 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.330 0.142 0.419 Gapped Lambda K H 0.267 0.0705 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,324,345 Number of extensions: 275516 Number of successful extensions: 996 Number of sequences better than 10.0: 1 Number of HSP's gapped: 989 Number of HSP's successfully gapped: 78 Length of query: 273 Length of database: 5,994,473 Length adjustment: 92 Effective length of query: 181 Effective length of database: 4,006,537 Effective search space: 725183197 Effective search space used: 725183197 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 56 (25.4 bits)