RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780539|ref|YP_003064952.1| ABC transporter, membrane
spanning protein (iron) [Candidatus Liberibacter asiaticus str. psy62]
         (273 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.6 bits (74), Expect = 0.096
 Identities = 50/301 (16%), Positives = 84/301 (27%), Gaps = 138/301 (45%)

Query: 7   EPFTYNYMNTAIWMSTL--IGCVCGLLSAYLILKGWSSIGNGISHAIFPGIVVCHRLNIP 64
           E F   +++    ++ L  IG  C                    +  +P        ++P
Sbjct: 290 ESF---FVSVRKAITVLFFIGVRC--------------------YEAYP------NTSLP 320

Query: 65  LSV-------G-ATISGMLA-TGIMVK-----IKETTK-LRED--VAIAVVYIIFYSFAM 107
            S+            S ML+ + +  +     + +T   L     V I++V         
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN----GAKN 376

Query: 108 FMLSLSPSAVYVENIFL-----GNTLSMSRSDTIQVLIITFSVACIVYMKWK-DFVLLF- 160
            ++S  P ++Y  N+ L      + L  SR        I FS       + K  F   F 
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSR--------IPFS-------ERKLKFSNRFL 421

Query: 161 -----FDERHAH----------------SVGINVKLLKMLFFSLLTITIVIG--FQTVG- 196
                F   H+H                +V  N K +++  +   T     G   + +  
Sbjct: 422 PVASPF---HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD--TFD---GSDLRVLSG 473

Query: 197 -ILLVIATVIT------PGATAKLMSKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGG 249
            I   I   I          T                   AT         + LD  PGG
Sbjct: 474 SISERIVDCIIRLPVKWETTTQ----------------FKAT---------HILDFGPGG 508

Query: 250 I 250
            
Sbjct: 509 A 509



 Score = 28.8 bits (64), Expect = 1.4
 Identities = 31/163 (19%), Positives = 49/163 (30%), Gaps = 62/163 (38%)

Query: 160 FFDE-RHAHS-----VGINVKLLKMLFFSLLTITI-VIGFQTVG--IL------------ 198
           +F+E R  +      VG  +K        L+  T+      T G  IL            
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228

Query: 199 --LVIATVITP--GATAKLMSKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPG------ 248
             L+   +  P  G            Y+V++ LLG T   L SY+        G      
Sbjct: 229 DYLLSIPISCPLIGVI------QLAHYVVTAKLLGFTPGELRSYLK-------GATGHSQ 275

Query: 249 GIIV--II----------ETSLFLLCLFFF----SKQY--RTS 273
           G++    I           +    + + FF      +    TS
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.330    0.142    0.419 

Gapped
Lambda     K      H
   0.267   0.0565    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,278,078
Number of extensions: 99014
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 13
Length of query: 273
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 182
Effective length of database: 3,487,026
Effective search space: 634638732
Effective search space used: 634638732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.7 bits)