RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780539|ref|YP_003064952.1| ABC transporter, membrane
spanning protein (iron) [Candidatus Liberibacter asiaticus str. psy62]
         (273 letters)



>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
           {Escherichia coli [TaxId: 562]}
          Length = 433

 Score = 24.5 bits (52), Expect = 9.5
 Identities = 25/154 (16%), Positives = 46/154 (29%), Gaps = 11/154 (7%)

Query: 89  LREDVAIAVVYIIFYSFAMFMLSLSPSAVYVENIFLGNTLSMSRSDTIQVLIITFSVACI 148
             ED     ++I          +L P      ++   + LS+      ++ +    +A +
Sbjct: 231 WLEDPNGGNLFIT--WREDMGPALRPLISAWVDVVCTSILSLPEEPKRRLWLFIDELASL 288

Query: 149 VYMKWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTV----GILLVIATV 204
             +      L           G+ V         L  +  V   QT+      L+V+   
Sbjct: 289 EKLASLADAL-----TKGRKAGLRVVAGLQSTSQLDDVYGVKEAQTLRASFRSLVVLGGS 343

Query: 205 ITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSY 238
            T   T + MS S G + V        +    S 
Sbjct: 344 RTDPKTNEDMSLSLGEHEVERDRYSKNTGKHHST 377


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.142    0.419 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 991,391
Number of extensions: 43326
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 8
Length of query: 273
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,254,276
Effective search space: 237058164
Effective search space used: 237058164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.5 bits)