HHsearch alignment for GI: 254780540 and conserved domain: COG0609

Probab=99.89  E-value=4e-20  Score=126.66  Aligned_cols=242  Identities=18%  Similarity=0.246  Sum_probs=186.9

Q ss_pred             HHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHC---C-----CHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999999999878899999--97689--964458999999999999722---1-----13345889999999999731233
Q gi|254780540|r   22 IITVIVVIPMSVLSCFII--LKNQS--FAGEAISHSVLPGIVLSHMAG---I-----PLEIGAFIAGMICTLSAGYLKEK   89 (277)
Q Consensus        22 l~~~l~~~~~~~lG~~vv--~rr~~--~~~~alsH~al~Gial~~l~g---~-----~~~lga~~~~ll~a~li~~l~~r   89 (277)
T Consensus        59 l~a~l~Ga~LavsG~~lQ~v~rNpLAdP~ilGIssGA~~~~~l~i~~~~~~~~~~~~~l~~~af~ga~~~~~lv~~ia~~  138 (334)
T COG0609          59 LLAILVGAALAVAGALLQGVTRNPLADPGILGISSGASLGAVLAILLFPLGLGISIYLLPLAAFLGALLAALLVYLIARL  138 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999548789932305655699999999999840100378999999999999999999999985


Q ss_pred             CCC--CHH--HHHHHHHHHHHHHHHHHHH-HCCC---CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             443--024--4789899999999998632-1024---4103457763175346655257899889999999986334311
Q gi|254780540|r   90 SYF--QED--LVLSIVFSGMFAIGIILIL-KVHS---SLHFSHILLGDMLGISKSDIITTAFFAFISISFLILKKNDLLL  161 (277)
Q Consensus        90 ~~~--~~d--~~igiv~~~~~algill~s-~~~~---~~~l~~~LfG~il~v~~~dv~~~~i~~~~~l~~~~~~~r~l~~  161 (277)
T Consensus       139 ~~~~~~~~~liL~Giais~~~~al~~~l~~~~~~~~~~~~~~~Wl~Gsl~~~~w~~~~~~~~~~~i~l~~~~~~~~~l~i  218 (334)
T COG0609         139 RGGGLSPLRLILAGIALSALFGALTSLLLILADDSLALQAILFWLLGSLGGATWSDVLILLPVILIGLLLLLFLSRKLNI  218 (334)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             16888838999999999999999999999966738777784987505645587788899999999999999999774767


Q ss_pred             CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             34668899761887423566999999999999998989999999999877899853088899999999999999999999
Q gi|254780540|r  162 MIFDPMHAHSMQIPIKLLHYNFLIVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIY  241 (277)
Q Consensus       162 ~sfD~~~A~~~Gi~v~~~~~~~~~lial~v~~~v~~vG~llv~alli~Paa~A~~~s~s~~~~i~~s~~ig~~~~~~G~~  241 (277)
T Consensus       219 l~lgd~~A~~LGi~v~~~r~~~~i~a~llt~~~Vs~~G~I~FVGL-i~PHiaR~lvg~~~r~lip~s~l~Ga~lll~aD~  297 (334)
T COG0609         219 LSLGDELAKSLGINVNRLRLLLLLLASLLTAAAVSLVGPIGFVGL-IAPHIARLLVGNDHRYLLPLSALLGALLLLLADI  297 (334)
T ss_pred             HHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHH
T ss_conf             544989998779878999999999999999999998121688886-3899999982876422178789999999999999


Q ss_pred             HHH----HHCCCCHHHHHHHHHHHHHH
Q ss_conf             999----95788189999999999999
Q gi|254780540|r  242 ISF----FINSAAAPTVVILMAIFFVV  264 (277)
Q Consensus       242 lS~----~~~~p~g~~Iv~~~~~~~~~  264 (277)
T Consensus       298 ~~R~i~~p~e~pvGiitaliGaP~Fiy  324 (334)
T COG0609         298 LARTILAPAEIPVGIVTALIGAPYFIY  324 (334)
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             998634732345899999999999999