HHsearch alignment for GI: 254780540 and conserved domain: COG4120
>COG4120 ABC-type uncharacterized transport system, permease component [General function prediction only].
Probab=96.69 E-value=0.032 Score=30.06 Aligned_cols=249 Identities=15% Similarity=0.104 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHH-H--HHHCCCHHH---HHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999878--89999997689964458999999-9999-9--972211334---58899999999997312334
Q gi|254780540|r 20 SFIITVIVVIPMSV--LSCFIILKNQSFAGEAISHSVLP-GIVL-S--HMAGIPLEI---GAFIAGMICTLSAGYLKEKS 90 (277)
Q Consensus 20 all~~~l~~~~~~~--lG~~vv~rr~~~~~~alsH~al~-Gial-~--~l~g~~~~l---ga~~~~ll~a~li~~l~~r~ 90 (277)
T Consensus 5 ~l~~aleqgLi~~~v~LGvyisFRiLnF-PDLTvdGsfpLGaAv~a~li~~G~nP~~at~~a~~AG~~aG~it~~l~~k~ 83 (293)
T COG4120 5 ILIGALEQGLIFAFVALGVYISFRILNF-PDLTVDGSFPLGAAVAATLIAAGVNPFLATLVAMVAGAAAGMITGLLNVKF 83 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHEEEECCC-CCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999989999999978613554068-875315751050999999998168779999999998789899999999722
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH--HHCCC----CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-----HH
Q ss_conf 43024478989999999999863--21024----410345776317534665525789988999999998633-----43
Q gi|254780540|r 91 YFQEDLVLSIVFSGMFAIGIILI--LKVHS----SLHFSHILLGDMLGISKSDIITTAFFAFISISFLILKKN-----DL 159 (277)
Q Consensus 91 ~~~~d~~igiv~~~~~algill~--s~~~~----~~~l~~~LfG~il~v~~~dv~~~~i~~~~~l~~~~~~~r-----~l 159 (277)
T Consensus 84 kI~~-LLAgIL-~M~alySVNLrIMgrpNl~ll~~~ti~~~l~~~~~~~~~~~pli~~vlvii~~~~v~~fl~t~~Glal 161 (293)
T COG4120 84 KILT-LLAGIL-TMIALYSVNLRIMGRPNLPLLGEDTIFTPLPFDGLLDYLLRPLILVVLVIIAKLLVIRFLKTDLGLAL 161 (293)
T ss_pred CHHH-HHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 2877-999999-99999988899855899653689863353554566225778799999999999999999734536221
Q ss_pred HHCCCCHHHHHHHCCCCCHHHHHHHHHH----HHHHHHHHHHH---------HHHHHHHHHHHHHHHHH-HHHCCHHHHH
Q ss_conf 1134668899761887423566999999----99999999898---------99999999998778998-5308889999
Q gi|254780540|r 160 LLMIFDPMHAHSMQIPIKLLHYNFLIVL----SLIIVISLKSI---------GIILPPAVLVLPGATAF-LLSKHHTTMI 225 (277)
Q Consensus 160 ~~~sfD~~~A~~~Gi~v~~~~~~~~~li----al~v~~~v~~v---------G~llv~alli~Paa~A~-~~s~s~~~~i 225 (277)
T Consensus 162 rAtG~N~~Ma~a~Gi~t~~~~~~Gl~lSNalvAl~GAL~AQ~~GfADVsmGiG~i-VvGL--AavIIGe~i~~~r~~~~~ 238 (293)
T COG4120 162 RATGDNPDMARAQGINTERYTILGLALSNALVALAGALFAQTNGFADVSMGIGTI-VVGL--AAVIIGETIFGSRRLLLA 238 (293)
T ss_pred ECCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHH-HHHH--HHHHHHHHHHHHHHHHHH
T ss_conf 0127987799983987256899989998889998566888743653002574424-5456--799977988745589999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999999578818999999999999999999960233
Q gi|254780540|r 226 LLSVIISVVCTLVGIYISFFINSAAAPTVVILMAIFFVVVYAYSIIINKR 275 (277)
Q Consensus 226 ~~s~~ig~~~~~~G~~lS~~~~~p~g~~Iv~~~~~~~~~~~~~~~l~~rr 275 (277)
T Consensus 239 lla~viGsI~Yr~~i~~~L~~Gl~~sdL-klitallv~i~L~lp~~k~~~ 287 (293)
T COG4120 239 LLAVVIGSILYRFAIALALSSGLDASDL-KLITALLVAIALILPKLKRLK 287 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999859986777-899999999999708888743