HHsearch alignment for GI: 254780540 and conserved domain: COG4139
>COG4139 BtuC ABC-type cobalamin transport system, permease component [Coenzyme metabolism].
Probab=98.76 E-value=4.2e-07 Score=56.43 Aligned_cols=221 Identities=14% Similarity=0.181 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHC--CC----HHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999998788999999768996445899999999--------9999722--11----3345889999999999731
Q gi|254780540|r 21 FIITVIVVIPMSVLSCFIILKNQSFAGEAISHSVLPGI--------VLSHMAG--IP----LEIGAFIAGMICTLSAGYL 86 (277)
Q Consensus 21 ll~~~l~~~~~~~lG~~vv~rr~~~~~~alsH~al~Gi--------al~~l~g--~~----~~lga~~~~ll~a~li~~l 86 (277)
T Consensus 60 ~lAv~~vGAsLAVsGAvm----QaL~~N~LAEPGllGVs~GA~Valv~~vL~~~~l~~~~a~~~~Ai~GALl~TliLl~~ 135 (326)
T COG4139 60 TLAVLLVGAALAVSGAVM----QALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLCAIAGALIITLILLRF 135 (326)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999727888708999----9996586668763431588409999999974775758999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHH------HCCCCC---HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2334430244789899999999998632------102441---0345776317534665525789988999999998633
Q gi|254780540|r 87 KEKSYFQEDLVLSIVFSGMFAIGIILIL------KVHSSL---HFSHILLGDMLGISKSDIITTAFFAFISISFLILKKN 157 (277)
Q Consensus 87 ~~r~~~~~d~~igiv~~~~~algill~s------~~~~~~---~l~~~LfG~il~v~~~dv~~~~i~~~~~l~~~~~~~r 157 (277)
T Consensus 136 aRr~~lT-----arLLLvGVALGIi~~A~mTWA~YFS~sL~LRQLMYWmMG~~~GVdW~Q~~L~L-a~~PvvIWl~~Qg~ 209 (326)
T COG4139 136 ARRHLST-----SRLLLAGVALGIICSALMTWAIYFSTSLDLRQLMYWMMGGFGGVDWRQSWLML-ALIPVLIWICCQSR 209 (326)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHH-HHHHHHHHHHCCCC
T ss_conf 9999989-----89999999999988878562003106526999999996775674299998999-99778886101676
Q ss_pred HHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 43113466889976188742356699999999999999898999999999987789985308889999999999999999
Q gi|254780540|r 158 DLLLMIFDPMHAHSMQIPIKLLHYNFLIVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTL 237 (277)
Q Consensus 158 ~l~~~sfD~~~A~~~Gi~v~~~~~~~~~lial~v~~~v~~vG~llv~alli~Paa~A~~~s~s~~~~i~~s~~ig~~~~~ 237 (277)
T Consensus 210 vLn~l~LGE~~ArQLG~~lh~~R~~LvLAi~llVG~SVAL~GvIgFiGL-ViPHiLRLt~~td~RlLLp~~Al~Ga~~Ll 288 (326)
T COG4139 210 PLNMLALGEISARQLGLPLWFWRNVLVLATGWMVGVSVALAGAIGFIGL-VIPHILRLCGLTDHRLLLPGCALAGASALL 288 (326)
T ss_pred CCHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCHHHHCCHHHH
T ss_conf 3147762514688729718999999999999998689997527767667-688999983574232012514650327999
Q ss_pred HHHHHHHH----HCCCCHH
Q ss_conf 99999999----5788189
Q gi|254780540|r 238 VGIYISFF----INSAAAP 252 (277)
Q Consensus 238 ~G~~lS~~----~~~p~g~ 252 (277)
T Consensus 289 ~AD~vARlaL~S~ELPiGV 307 (326)
T COG4139 289 LADIVARLALASAELPIGV 307 (326)
T ss_pred HHHHHHHHHHCCCCCCCEE
T ss_conf 9999999871236777326