HHsearch alignment for GI: 254780540 and conserved domain: COG4177
>COG4177 LivM ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism].
Probab=90.13 E-value=1.1 Score=21.86 Aligned_cols=210 Identities=14% Similarity=0.169 Sum_probs=92.5
Q ss_pred HHHHHHHHHH---HHHHHHC-----CCHHH---HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 5899999999---9999722-----11334---58899999999997312334430244789899999999998632---
Q gi|254780540|r 49 AISHSVLPGI---VLSHMAG-----IPLEI---GAFIAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMFAIGIILIL--- 114 (277)
Q Consensus 49 alsH~al~Gi---al~~l~g-----~~~~l---ga~~~~ll~a~li~~l~~r~~~~~d~~igiv~~~~~algill~s--- 114 (277)
T Consensus 56 slGha~F~glGAY~~a~l~~~~~g~~~~~~~l~~~~~~~al~g~l~g~p~lR--l~g~ylaI~Tla~~~~~~~~~~~~~~ 133 (314)
T COG4177 56 SLGHAAFFGLGAYTAALLLARLLGGLSFWLALLLGGLVAALLGLLLGLPALR--LRGDYLAIVTLAFGEIFRILLLNATE 133 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_conf 1477999998999999998887513428999999999999999999879999--85289999999999999999971667
Q ss_pred HCCCCCHHHH----HHHHHHHHCCHHHHHHHH-HHHHHHHHHHH-----HHHHHHHHCCCCHHHHHHHCCCCCHHHHHHH
Q ss_conf 1024410345----776317534665525789-98899999999-----8633431134668899761887423566999
Q gi|254780540|r 115 KVHSSLHFSH----ILLGDMLGISKSDIITTA-FFAFISISFLI-----LKKNDLLLMIFDPMHAHSMQIPIKLLHYNFL 184 (277)
Q Consensus 115 ~~~~~~~l~~----~LfG~il~v~~~dv~~~~-i~~~~~l~~~~-----~~~r~l~~~sfD~~~A~~~Gi~v~~~~~~~~ 184 (277)
T Consensus 134 ~tgG~~Gl~~i~~~~l~g~~--~~~~~~y~~~l~~l~l~~~~~~~l~~S~~Gr~l~AiRedE~~a~alG~n~~~~Kl~aF 211 (314)
T COG4177 134 LTGGENGLSGIPRPTLLGFP--SRARGLYYLALLLLLLTLLVLERLVRSPFGRALRAIREDEIAARALGINVTRYKLLAF 211 (314)
T ss_pred HHCCCCCCCCCCCHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHCCCCHHHHHHHHH
T ss_conf 51998771268833230555--3029999999999999999999986497033686661578999985998899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH--------H-HHHCCCC--HH
Q ss_conf 99999999999898999999999-98778998530888999999999999999999999--------9-9957881--89
Q gi|254780540|r 185 IVLSLIIVISLKSIGIILPPAVL-VLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYI--------S-FFINSAA--AP 252 (277)
Q Consensus 185 ~lial~v~~~v~~vG~llv~all-i~Paa~A~~~s~s~~~~i~~s~~ig~~~~~~G~~l--------S-~~~~~p~--g~ 252 (277)
T Consensus 212 ~isa~~AGi----AGaL~a~~~~~v~p~~----f~~~~S~~~l~~vvlGG~Gt~~G~v~Ga~l~~~~~~~l~~~~~~~~~ 283 (314)
T COG4177 212 VISAAIAGI----AGALYALYLGFVSPES----FSFTLSIEVLAMVVLGGAGTLFGALLGAVLVVLLKELLRGLLPRPVE 283 (314)
T ss_pred HHHHHHHHH----HHHHHHHHHCEECCHH----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 999999999----9999999815038002----53999999999999847643188999999999999999762453158
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999
Q gi|254780540|r 253 TVVILMAIFFVVVYAYSI 270 (277)
Q Consensus 253 ~Iv~~~~~~~~~~~~~~~ 270 (277)
T Consensus 284 ~~~~v~G~llvlv~l~~P 301 (314)
T COG4177 284 YRLLVFGLLLVLVVLFRP 301 (314)
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999837