HHsearch alignment for GI: 254780540 and conserved domain: PRK11285
>PRK11285 araH L-arabinose transporter permease protein; Provisional.
Probab=96.98 E-value=0.019 Score=31.37 Aligned_cols=118 Identities=11% Similarity=0.123 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHC-CC---CCHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 89999999999731233443024478989999999999863-210-24---41034577631753466552578998899
Q gi|254780540|r 73 FIAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMFAIGIILI-LKV-HS---SLHFSHILLGDMLGISKSDIITTAFFAFI 147 (277)
Q Consensus 73 ~~~~ll~a~li~~l~~r~~~~~d~~igiv~~~~~algill~-s~~-~~---~~~l~~~LfG~il~v~~~dv~~~~i~~~~ 147 (277)
T Consensus 115 l~~G~~~G~iNG~lv~~~~ip~--fI~TLgt~~i~~Gl~~~~t~g~~i~~~~~~~~~~~~~~~~gip~~~-~i~ii~~~~ 191 (327)
T PRK11285 115 LLAGAAVGLVNGFVIARLRINA--LITTLATMQIVRGLAYIISDGKAVGISDERFFALGYASFFGVPAPI-WLTVACFVV 191 (327)
T ss_pred HHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHEECCCEEECCCCHHHHHHHCCCCCCCCHHH-HHHHHHHHH
T ss_conf 9999999999838676107857--9999999999998785332884325588899985138423754899-999999999
Q ss_pred HHHH--HHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999--998633431134668899761887423566999999999999
Q gi|254780540|r 148 SISF--LILKKNDLLLMIFDPMHAHSMQIPIKLLHYNFLIVLSLIIVI 193 (277)
Q Consensus 148 ~l~~--~~~~~r~l~~~sfD~~~A~~~Gi~v~~~~~~~~~lial~v~~ 193 (277)
T Consensus 192 ~~~~l~~T~~Gr~lyAvG~N~~AA~~sGI~v~r~~i~ay~isG~lagl 239 (327)
T PRK11285 192 FGFLLNKTVFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSAL 239 (327)
T ss_pred HHHHHHHCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999996340545998816989999881898337401999999999999