HHsearch alignment for GI: 254780540 and conserved domain: cd06574

>cd06574 TM_PBP1_branched-chain-AA_like Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBP
Probab=97.51  E-value=0.0046  Score=34.64  Aligned_cols=145  Identities=15%  Similarity=0.137  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHH--HHHH---HCCCHH---HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             58999999999--9997---221133---458899999999997312334430244789899999999998632102441
Q gi|254780540|r   49 AISHSVLPGIV--LSHM---AGIPLE---IGAFIAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMFAIGIILILKVHSSL  120 (277)
Q Consensus        49 alsH~al~Gia--l~~l---~g~~~~---lga~~~~ll~a~li~~l~~r~~~~~d~~igiv~~~~~algill~s~~~~~~  120 (277)
T Consensus        22 nla~g~~~~lGay~~~~~~~~g~~~~lal~~a~~~~~l~g~~~g~~~~r~~~~~~i~tl~~~~~~~~i~~~~~~~~~~~~  101 (266)
T cd06574          22 DLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILIMIGLYSINLRIMGGPNIPL  101 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             48999999999999999998711299999999999999999997666200220799999999999999999964666677


Q ss_pred             ---HH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             ---03-4577631753466552578998899999999-----86334311346688997618874235669999999999
Q gi|254780540|r  121 ---HF-SHILLGDMLGISKSDIITTAFFAFISISFLI-----LKKNDLLLMIFDPMHAHSMQIPIKLLHYNFLIVLSLII  191 (277)
Q Consensus       121 ---~l-~~~LfG~il~v~~~dv~~~~i~~~~~l~~~~-----~~~r~l~~~sfD~~~A~~~Gi~v~~~~~~~~~lial~v  191 (277)
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~rT~~G~~lrAvg~n~~aA~~~GInv~r~~~~af~isg~la  181 (266)
T cd06574         102 GTRDTLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARSLGINVDRTRILGLVISNALA  181 (266)
T ss_pred             CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             87654541355410110068999999999999999999987978485413438879999869975788878999999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780540|r  192 VI  193 (277)
Q Consensus       192 ~~  193 (277)
T Consensus       182 gl  183 (266)
T cd06574         182 AL  183 (266)
T ss_pred             HH
T ss_conf             99