HHsearch alignment for GI: 254780540 and conserved domain: cd06574
>cd06574 TM_PBP1_branched-chain-AA_like Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBP
Probab=97.51 E-value=0.0046 Score=34.64 Aligned_cols=145 Identities=15% Similarity=0.137 Sum_probs=68.1
Q ss_pred HHHHHHHHHHH--HHHH---HCCCHH---HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 58999999999--9997---221133---458899999999997312334430244789899999999998632102441
Q gi|254780540|r 49 AISHSVLPGIV--LSHM---AGIPLE---IGAFIAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMFAIGIILILKVHSSL 120 (277)
Q Consensus 49 alsH~al~Gia--l~~l---~g~~~~---lga~~~~ll~a~li~~l~~r~~~~~d~~igiv~~~~~algill~s~~~~~~ 120 (277)
T Consensus 22 nla~g~~~~lGay~~~~~~~~g~~~~lal~~a~~~~~l~g~~~g~~~~r~~~~~~i~tl~~~~~~~~i~~~~~~~~~~~~ 101 (266)
T cd06574 22 DLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILIMIGLYSINLRIMGGPNIPL 101 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 48999999999999999998711299999999999999999997666200220799999999999999999964666677
Q ss_pred ---HH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf ---03-4577631753466552578998899999999-----86334311346688997618874235669999999999
Q gi|254780540|r 121 ---HF-SHILLGDMLGISKSDIITTAFFAFISISFLI-----LKKNDLLLMIFDPMHAHSMQIPIKLLHYNFLIVLSLII 191 (277)
Q Consensus 121 ---~l-~~~LfG~il~v~~~dv~~~~i~~~~~l~~~~-----~~~r~l~~~sfD~~~A~~~Gi~v~~~~~~~~~lial~v 191 (277)
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~rT~~G~~lrAvg~n~~aA~~~GInv~r~~~~af~isg~la 181 (266)
T cd06574 102 GTRDTLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARSLGINVDRTRILGLVISNALA 181 (266)
T ss_pred CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 87654541355410110068999999999999999999987978485413438879999869975788878999999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780540|r 192 VI 193 (277)
Q Consensus 192 ~~ 193 (277)
T Consensus 182 gl 183 (266)
T cd06574 182 AL 183 (266)
T ss_pred HH
T ss_conf 99