HHsearch alignment for GI: 254780540 and conserved domain: cd06581

>cd06581 TM_PBP1_LivM_like Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transpo
Probab=97.92  E-value=0.001  Score=38.13  Aligned_cols=93  Identities=10%  Similarity=0.043  Sum_probs=60.7

Q ss_pred             HHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-H---HHHHHHHH---HHHHHHHHHHHHHHH--CCHHHHH
Q ss_conf             6334311346688997618874235669999999999999-9---89899999---999998778998530--8889999
Q gi|254780540|r  155 KKNDLLLMIFDPMHAHSMQIPIKLLHYNFLIVLSLIIVIS-L---KSIGIILP---PAVLVLPGATAFLLS--KHHTTMI  225 (277)
Q Consensus       155 ~~r~l~~~sfD~~~A~~~Gi~v~~~~~~~~~lial~v~~~-v---~~vG~llv---~alli~Paa~A~~~s--~s~~~~i  225 (277)
T Consensus       147 ~G~~irAvg~n~~aA~~~GInv~rv~~~~f~isg~laglaG~l~~~~~~~~~p~~~g~~~~~~~~~~~vlGG~gsi~Ga~  226 (268)
T cd06581         147 FGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESFGFALSIELLLMVVLGGLGSLLGPV  226 (268)
T ss_pred             CCEEHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEECCCCHHHHH
T ss_conf             66358875328599997796899999999999999999999999987166180130189999999886154887659999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999957
Q gi|254780540|r  226 LLSVIISVVCTLVGIYISFFIN  247 (277)
Q Consensus       226 ~~s~~ig~~~~~~G~~lS~~~~  247 (277)
T Consensus       227 iG~lilg~~~~~~~~~~~~~~~  248 (268)
T cd06581         227 LGAALLVLLPELLRSLGPGLRL  248 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999986078999