Query gi|254780540|ref|YP_003064953.1| ABC transporter, membrane spanning protein (iron transport) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 277
No_of_seqs 131 out of 2480
Neff 7.0
Searched_HMMs 23785
Date Tue May 31 20:02:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780540.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nq2_A Hypothetical ABC transp 99.9 8.7E-22 3.7E-26 134.4 21.8 244 21-265 66-326 (337)
2 2qi9_A Vitamin B12 import syst 99.9 1.2E-20 5E-25 128.3 17.2 242 21-264 60-319 (326)
3 2zxe_G FXYD10, phospholemman-l 15.5 42 0.0018 12.1 3.3 30 10-40 10-39 (74)
4 2jo1_A Phospholemman; FXYD1, N 15.3 43 0.0018 12.0 3.7 30 10-40 7-36 (72)
5 2jp3_A FXYD domain-containing 14.2 46 0.0019 11.9 3.7 29 11-40 9-37 (67)
6 1afo_A Glycophorin A; integral 13.2 49 0.0021 11.7 1.7 24 219-242 5-28 (40)
7 1td4_A Head decoration protein 10.4 6.3 0.00027 16.5 -4.5 14 41-54 100-113 (115)
8 1tba_A TAFII230, transcription 9.9 57 0.0024 11.4 0.3 15 118-132 6-20 (67)
9 2zr9_A Protein RECA, recombina 7.4 83 0.0035 10.5 1.7 18 162-179 99-116 (349)
10 3io5_A Recombination and repai 6.9 87 0.0037 10.4 1.7 17 163-179 69-85 (333)
No 1
>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.91 E-value=8.7e-22 Score=134.42 Aligned_cols=244 Identities=11% Similarity=0.158 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHCC---CCC
Q ss_conf 99999999998788999999-76899644---58999999999999722113---3458899999999997312---334
Q gi|254780540|r 21 FIITVIVVIPMSVLSCFIIL-KNQSFAGE---AISHSVLPGIVLSHMAGIPL---EIGAFIAGMICTLSAGYLK---EKS 90 (277)
Q Consensus 21 ll~~~l~~~~~~~lG~~vv~-rr~~~~~~---alsH~al~Gial~~l~g~~~---~lga~~~~ll~a~li~~l~---~r~ 90 (277)
.+++.++|...+.-|..... -|..+.+- +++..+-.|++++.+++.+. ...+..++.........+. ++.
T Consensus 66 ~l~a~l~Ga~LavaG~llQ~~~rNpLA~P~iLGissGA~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (337)
T 2nq2_A 66 ILTALCVGAGLALSGVVLQGIFRNPLVNPHIIGVTSGSAFGGTLAIFFGFSLYGLFTSTILFGFGTLALVFLFSFKFNQR 145 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCTTCCTTTTSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999998657999990665489999999999999840022578999999999999999999964778
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH-CCC---CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 4302447898999999999986321-024---410345776317534665525789988999999998633431134668
Q gi|254780540|r 91 YFQEDLVLSIVFSGMFAIGIILILK-VHS---SLHFSHILLGDMLGISKSDIITTAFFAFISISFLILKKNDLLLMIFDP 166 (277)
Q Consensus 91 ~~~~d~~igiv~~~~~algill~s~-~~~---~~~l~~~LfG~il~v~~~dv~~~~i~~~~~l~~~~~~~r~l~~~sfD~ 166 (277)
+...-..+|+..+..+.....+... ..+ ......|++||....+|+|++......+......+...|+++.+.+||
T Consensus 146 ~~~~liL~gi~~~~~~~a~~~~~~~l~~~~~~~~~~~~W~~Gs~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~l~lG~ 225 (337)
T 2nq2_A 146 SLLMLILIGMILSGLFSALVSLLQYISDTEEKLPSIVFWLMGSFATSNWEKLLFFFVPFLLCSSILLSLSWRLNLLSLDE 225 (337)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSSCTTTHHHHHHHHTTCCSTTCCHHHHHHHHHHHHHHHHHHHHTTTGGGGGGSCH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCHHCCCH
T ss_conf 72177876799999999999999997224889999999850143568843213311211478888888630056210793
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 8997618874235669999999999999989899999999998778998530888999999999999999999999999-
Q gi|254780540|r 167 MHAHSMQIPIKLLHYNFLIVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYISFF- 245 (277)
Q Consensus 167 ~~A~~~Gi~v~~~~~~~~~lial~v~~~v~~vG~llv~alli~Paa~A~~~s~s~~~~i~~s~~ig~~~~~~G~~lS~~- 245 (277)
|.|++.|+|+++.+...+.+.++.++.++..+|.+.+.++ +.|+.+.+...+++++.++.|.++|..-....-.++-.
T Consensus 226 ~~A~sLGv~v~~~r~~~l~l~~llta~~vs~~G~I~FvGL-i~Phiar~l~g~~~~~~l~~s~l~Ga~lll~aD~i~r~l 304 (337)
T 2nq2_A 226 KEAKALGVKMAPLRWLVIFLSGSLVACQVAISGSIGWVGL-IIPHLSRMLVGANHQSLLPCTMLVGATYMLLVDNVARSL 304 (337)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSSTT-HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8898789979999999999999999999963776303874-099999998188853399999999999999999998665
Q ss_pred --HCCCCHHHHHHHHHHHHHHH
Q ss_conf --57881899999999999999
Q gi|254780540|r 246 --INSAAAPTVVILMAIFFVVV 265 (277)
Q Consensus 246 --~~~p~g~~Iv~~~~~~~~~~ 265 (277)
.++|.|..+.++.+.+|+..
T Consensus 305 ~p~elPvG~vtaliG~p~fl~l 326 (337)
T 2nq2_A 305 SDAEIPISILTALIGAPLFGVL 326 (337)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEHHHHHHHHHHHHHHHH
T ss_conf 6777319999999999999999
No 2
>2qi9_A Vitamin B12 import system permease protein BTUC; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_A*
Probab=99.87 E-value=1.2e-20 Score=128.30 Aligned_cols=242 Identities=10% Similarity=0.128 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999998788999999-7689964---45899999999999972211------33458899999999997312334
Q gi|254780540|r 21 FIITVIVVIPMSVLSCFIIL-KNQSFAG---EAISHSVLPGIVLSHMAGIP------LEIGAFIAGMICTLSAGYLKEKS 90 (277)
Q Consensus 21 ll~~~l~~~~~~~lG~~vv~-rr~~~~~---~alsH~al~Gial~~l~g~~------~~lga~~~~ll~a~li~~l~~r~ 90 (277)
.+++.++|...+.-|..... -|..+.+ -++++.+..|++++..++.. ....++..+...........++.
T Consensus 60 ~l~a~l~Ga~LavsG~~lQ~~~rNpLA~P~iLGissGA~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 139 (326)
T 2qi9_A 60 TLAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLSAIAGALIITLILLRFARRH 139 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCGGGGTHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999957988784022220169999999999630267899999999999999999999885355
Q ss_pred CCCHH-HHHHHHHHHHHHHHHHHHHHC-C-C-CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 43024-478989999999999863210-2-4-410345776317534665525789988999999998633431134668
Q gi|254780540|r 91 YFQED-LVLSIVFSGMFAIGIILILKV-H-S-SLHFSHILLGDMLGISKSDIITTAFFAFISISFLILKKNDLLLMIFDP 166 (277)
Q Consensus 91 ~~~~d-~~igiv~~~~~algill~s~~-~-~-~~~l~~~LfG~il~v~~~dv~~~~i~~~~~l~~~~~~~r~l~~~sfD~ 166 (277)
..... ...|+..+..+.....+.... + . ..++..|+.|+....+|+|++........ ......+.|+++.++.||
T Consensus 140 ~~~~~liL~Gi~i~~~~~a~~~~l~~~~~~~~~~~~~~w~~Gs~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~l~lG~ 218 (326)
T 2qi9_A 140 LSTSRLLLAGVALGIISSALMTWAIYFSTSVDLRQLMYWMMGGFGGVDWRQSWLMLALIPV-LLWISSQSRPMNMLALGE 218 (326)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHTCCCTTCCGGGHHHHTTTHHH-HHHHTTCHHHHHHHHTCH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCH
T ss_conf 6505889999999999999999999816899999999997347778874677889999999-999999998877763684
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 899761887423566999999999999998989999999999877899853088899999999999999999999999--
Q gi|254780540|r 167 MHAHSMQIPIKLLHYNFLIVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYISF-- 244 (277)
Q Consensus 167 ~~A~~~Gi~v~~~~~~~~~lial~v~~~v~~vG~llv~alli~Paa~A~~~s~s~~~~i~~s~~ig~~~~~~G~~lS~-- 244 (277)
|.|+..|+|+++.+...+.+.++.++.++..+|.+.+.++ +.|+.+.+...+++++.++.|.++|..-....-.++-
T Consensus 219 ~~A~sLGv~v~~~r~~~l~~~~ll~a~~va~~G~I~FvGL-i~PhiaR~~~g~~~~~~l~~s~l~Ga~lll~aD~i~r~i 297 (326)
T 2qi9_A 219 ISARQLGLPLWFWRNVLVAATGWMVGVSVALAGAIGFIGL-VIPHILRLSGLTDHRVLLPGCALAGASALLLADIVARLA 297 (326)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSSTT-HHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9888679858998899886889999999985156999999-899999986277743699999999999999999999661
Q ss_pred --HHCCCCHHHHHHHHHHHHHH
Q ss_conf --95788189999999999999
Q gi|254780540|r 245 --FINSAAAPTVVILMAIFFVV 264 (277)
Q Consensus 245 --~~~~p~g~~Iv~~~~~~~~~ 264 (277)
..++|.|-.+.++.+.+|+.
T Consensus 298 ~~p~eiPvGvitaliG~P~fi~ 319 (326)
T 2qi9_A 298 LAAAELPIGVVTATLGAPVFIW 319 (326)
T ss_dssp STTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 4665421999999999999999
No 3
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=15.50 E-value=42 Score=12.08 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=12.2
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9733668999999999999998788999999
Q gi|254780540|r 10 LPLTFPAIQNSFIITVIVVIPMSVLSCFIIL 40 (277)
Q Consensus 10 ~~l~~~f~~~all~~~l~~~~~~~lG~~vv~ 40 (277)
+||.|++ ++==+.+++.+.+.-++|..+++
T Consensus 10 dpF~YDy-~tLRigGLi~a~vLf~~GI~iil 39 (74)
T 2zxe_G 10 ERFTYDY-YRLRVVGLIVAAVLCVIGIIILL 39 (74)
T ss_dssp GGGCCCH-HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCH-HHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 9851432-78503220679999999999998
No 4
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=15.27 E-value=43 Score=12.04 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=14.0
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9733668999999999999998788999999
Q gi|254780540|r 10 LPLTFPAIQNSFIITVIVVIPMSVLSCFIIL 40 (277)
Q Consensus 10 ~~l~~~f~~~all~~~l~~~~~~~lG~~vv~ 40 (277)
+||.|++ +.==+.|++.+.+.-++|..+++
T Consensus 7 DPF~YDY-~tLRiGGLi~a~vlf~~Giliil 36 (72)
T 2jo1_A 7 DPFTYDY-QSLQIGGLVIAGILFILGILIVL 36 (72)
T ss_dssp SGGGCST-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCH-HHHEECCCHHHHHHHHHHHHHHH
T ss_conf 9851441-78505442458999999999998
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=14.16 E-value=46 Score=11.87 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=13.2
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 733668999999999999998788999999
Q gi|254780540|r 11 PLTFPAIQNSFIITVIVVIPMSVLSCFIIL 40 (277)
Q Consensus 11 ~l~~~f~~~all~~~l~~~~~~~lG~~vv~ 40 (277)
||.|++ ++==+.+++.+.+.-++|..+++
T Consensus 9 pF~YDy-~tLRigGLi~a~vlf~~Giliil 37 (67)
T 2jp3_A 9 PFYYDW-ESLQLGGLIFGGLLCIAGIALAL 37 (67)
T ss_dssp GGGGGG-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCH-HHHEECCCHHHHHHHHHHHHHHH
T ss_conf 861431-78414341579999999999998
No 6
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=13.22 E-value=49 Score=11.72 Aligned_cols=24 Identities=17% Similarity=0.391 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 888999999999999999999999
Q gi|254780540|r 219 KHHTTMILLSVIISVVCTLVGIYI 242 (277)
Q Consensus 219 ~s~~~~i~~s~~ig~~~~~~G~~l 242 (277)
+++++-.+.-.++|+.+++.|..+
T Consensus 5 h~fs~p~i~lii~gvmagvigtil 28 (40)
T 1afo_A 5 HHFSEPEITLIIFGVMAGVIGTIL 28 (40)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 447773058999999998999999
No 7
>1td4_A Head decoration protein; SHP, viral protein; 1.50A {Enterobacteria phage P21} SCOP: b.85.2.1 PDB: 1td3_A 1td0_A
Probab=10.41 E-value=6.3 Score=16.54 Aligned_cols=14 Identities=50% Similarity=0.845 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 76899644589999
Q gi|254780540|r 41 KNQSFAGEAISHSV 54 (277)
Q Consensus 41 rr~~~~~~alsH~a 54 (277)
|+.+|.|.++||++
T Consensus 100 K~~AF~Gs~vSh~~ 113 (115)
T 1td4_A 100 KANAFAGSALSHAA 113 (115)
T ss_dssp HHTTTTTSEEEEEC
T ss_pred HHHHHHCCCCCCCC
T ss_conf 76666278542135
No 8
>1tba_A TAFII230, transcription initiation factor IID 230K chain; complex (transcription factors), TAF, TAFII230, solution structure; NMR {Drosophila melanogaster} SCOP: a.15.1.1
Probab=9.87 E-value=57 Score=11.40 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=10.3
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 441034577631753
Q gi|254780540|r 118 SSLHFSHILLGDMLG 132 (277)
Q Consensus 118 ~~~~l~~~LfG~il~ 132 (277)
+..++..+|||||-.
T Consensus 6 ~~~~LtGfLFGNId~ 20 (67)
T 1tba_A 6 NGLDLTGILFGNIDS 20 (67)
T ss_dssp CSCCCTTHHHHCEET
T ss_pred CCCCEEEEEECCCCC
T ss_conf 772101224424377
No 9
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, cytoplasm, DNA damage, DNA recombination; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=7.39 E-value=83 Score=10.51 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHCCCCCHH
Q ss_conf 346688997618874235
Q gi|254780540|r 162 MIFDPMHAHSMQIPIKLL 179 (277)
Q Consensus 162 ~sfD~~~A~~~Gi~v~~~ 179 (277)
-+|||++|+..|+++..+
T Consensus 99 ~~~~~~~a~~~GvD~~~l 116 (349)
T 2zr9_A 99 HALDPEYAKKLGVDTDSL 116 (349)
T ss_dssp CCCCHHHHHHTTCCGGGC
T ss_pred CCCCHHHHHHCCCCHHHE
T ss_conf 558999999839988996
No 10
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=6.94 E-value=87 Score=10.38 Aligned_cols=17 Identities=18% Similarity=0.133 Sum_probs=13.1
Q ss_pred CCCHHHHHHHCCCCCHH
Q ss_conf 46688997618874235
Q gi|254780540|r 163 IFDPMHAHSMQIPIKLL 179 (277)
Q Consensus 163 sfD~~~A~~~Gi~v~~~ 179 (277)
+|||++|+..|+++..+
T Consensus 69 ~~~~~~a~~lGvd~~~l 85 (333)
T 3io5_A 69 GITPAYLRSMGVDPERV 85 (333)
T ss_dssp CCCHHHHHHTTCCGGGE
T ss_pred CCCHHHHHHCCCCCCCC
T ss_conf 78989999809881005
Done!