RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780540|ref|YP_003064953.1| ABC transporter, membrane
spanning protein (iron transport) [Candidatus Liberibacter asiaticus
str. psy62]
         (277 letters)



>gnl|CDD|109985 pfam00950, ABC-3, ABC 3 transport family. 
          Length = 258

 Score =  165 bits (420), Expect = 1e-41
 Identities = 89/257 (34%), Positives = 166/257 (64%), Gaps = 1/257 (0%)

Query: 14  FPAIQNSFIITVIVVIPMSVLSCFIILKNQSFAGEAISHSVLPGIVLSHMAGIPLEIGAF 73
           +  +Q + + +++V +   +L  F++L+ QS  G+A+SH+VLPG+ L+   GI   IGAF
Sbjct: 2   YEFMQRALLASILVSLACGILGSFLVLRRQSLMGDALSHAVLPGVALAFFLGINPLIGAF 61

Query: 74  IAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMFAIGIILILKV-HSSLHFSHILLGDMLG 132
           + G+I  ++ GYL+  S  +ED  + IVFS   A+G++LI  +  S++   H L G++LG
Sbjct: 62  LFGLIAAVAIGYLRRNSRLKEDTAIGIVFSSFLALGLLLISLIKGSAVDLDHYLFGNILG 121

Query: 133 ISKSDIITTAFFAFISISFLILKKNDLLLMIFDPMHAHSMQIPIKLLHYNFLIVLSLIIV 192
           IS+ D+I  A    I +  L+L   +LLL+ FDP HA  + +P++ L+   LI+L+L IV
Sbjct: 122 ISQEDLIQIAIITAIILLLLLLFWKELLLITFDPDHAKVIGLPVQFLYLLLLILLALTIV 181

Query: 193 ISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYISFFINSAAAP 252
           ++++++G IL  A+L+ P ATA LL++   +M+L++  I +V ++ G+ +S++ ++   P
Sbjct: 182 VAMQAVGAILVIALLITPAATARLLTRSFESMMLIASAIGMVSSVAGLLLSYYFDTPTGP 241

Query: 253 TVVILMAIFFVVVYAYS 269
            +V++  + F++ +A++
Sbjct: 242 VIVLIATLLFLISFAFA 258


>gnl|CDD|31305 COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease
           components [Inorganic ion transport and metabolism].
          Length = 274

 Score =  141 bits (357), Expect = 2e-34
 Identities = 90/274 (32%), Positives = 171/274 (62%), Gaps = 1/274 (0%)

Query: 4   FLHYVLLPLTFPAIQNSFIITVIVVIPMSVLSCFIILKNQSFAGEAISHSVLPGIVLSHM 63
            L  +L    +  +QN+ + ++++ I   +L  F++L+  S  G+A+SH+VLPG+ L  +
Sbjct: 1   MLELLLELFQYDFMQNALLASLLIGIACGLLGTFLVLRRMSLMGDALSHAVLPGVALGFL 60

Query: 64  AGIPLEIGAFIAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMFAIGIILILKV-HSSLHF 122
            GI   +GAFI G++  L  GYL+ +S  +ED  + IVFS   A+G++L+  V  S +  
Sbjct: 61  LGINPLLGAFIFGLLAALLIGYLRRRSKLKEDTAIGIVFSSGLALGLVLLSLVPSSRVDL 120

Query: 123 SHILLGDMLGISKSDIITTAFFAFISISFLILKKNDLLLMIFDPMHAHSMQIPIKLLHYN 182
            H L GD+L +S+SD++  A    + +  L+L   +LLL+ FDP  A  + + ++LLHY 
Sbjct: 121 MHYLFGDILAVSRSDLLLIAIIGALVLLLLLLFYRELLLLTFDPEFARVLGLNVRLLHYL 180

Query: 183 FLIVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYI 242
            L++L+L IV ++K++G +L  A+L++P ATA LL+K    M++++V+I ++ +++G+Y+
Sbjct: 181 LLVLLALTIVAAIKAVGALLVSALLIIPAATARLLTKSFRQMLIIAVLIGLLSSVLGLYL 240

Query: 243 SFFINSAAAPTVVILMAIFFVVVYAYSIIINKRT 276
           S++++  + P +V++ A+ F++ + +        
Sbjct: 241 SYYLDLPSGPAIVLIAALLFLLSFLFGPKKGVLA 274


>gnl|CDD|119348 cd06550, TM_ABC_iron-siderophores_like, Transmembrane subunit (TM),
           of Periplasmic Binding Protein (PBP)-dependent
           ATP-Binding Cassette (ABC) transporters involved in the
           uptake of siderophores, heme, vitamin B12, or the
           divalent cations Mg2+ and Zn2+. PBP-dependent ABC
           transporters consist of a PBP, two TMs, and two
           cytoplasmic ABCs, and are mainly involved in importing
           solutes from the environment. The solute is captured by
           the PBP which delivers it to a gated translocation
           pathway formed by the two TMs. The TMs are bundles of
           alpha helices that transverse the cytoplasmic membrane
           multiple times. The two ABCs bind and hydrolyze ATP and
           drive the transport reaction. Each TM has a prominent
           cytoplasmic loop which contacts an ABC and represents a
           conserved motif. The two TMs form either a homodimer
           (e.g. in the case of the BtuC subunits of the
           Escherichia coli BtuCD vitamin B12 transporter), a
           heterodimer (e.g. the TroC and TroD subunits of the
           Treponema pallidum general transition metal transporter,
           TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein
           of the E. coli ferrichrome transporter, FhuBC). FhuB
           contains two tandem TMs which associate to form the
           pseudo-heterodimer. Both FhuB TMs are found in this
           hierarchy..
          Length = 261

 Score = 86.8 bits (216), Expect = 6e-18
 Identities = 59/262 (22%), Positives = 117/262 (44%), Gaps = 13/262 (4%)

Query: 17  IQNSFIITVIVVIPMSVLSCFIILKNQSFAGEAISHSVLPGIVLSHMAGI---PLEIGAF 73
           +  + ++   + +  ++L      +  S +   ISH  L G+VL+ + GI      +GAF
Sbjct: 1   LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAF 60

Query: 74  IAGMICTLSAGYLKEKSYFQ----EDLVLSIVFSGMFAIGIILILKVHSSLHFS--HILL 127
                  ++   L   S       + +++ IV S  F+ G+ILI  +           L 
Sbjct: 61  AFAGALAIALLVLLLASRGGLSPSKLILIGIVLSAFFSAGVILISLLSDDSLQDLNIWLF 120

Query: 128 GDMLGISKSDIITTAFFAFISISFLILKKNDLLLMIFDPMHAHSMQIPIKLLHYNFLIVL 187
           G +LG++  D++       + +  L+L    L L+ FD   A S+ I + LL    L+++
Sbjct: 121 GSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDEDLAKSLGINVNLLRLLLLLLV 180

Query: 188 SLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYISFFI- 246
           +L++V ++  +G+IL    L+ P     L  + H  ++ LS ++  +  L+G  +S  + 
Sbjct: 181 ALLVVAAVALVGVIL-FVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTLL 239

Query: 247 --NSAAAPTVVILMAIFFVVVY 266
                  P   +L A +F+ + 
Sbjct: 240 PSELPVGPVTALLGAPYFLYLL 261


>gnl|CDD|144573 pfam01032, FecCD, FecCD transport family.  This is a sub-family of
           bacterial binding protein-dependent transport systems
           family. This Pfam entry contains the inner components of
           this multicomponent transport system.
          Length = 312

 Score = 30.2 bits (69), Expect = 0.63
 Identities = 34/173 (19%), Positives = 74/173 (42%), Gaps = 2/173 (1%)

Query: 96  LVLSIVFSGMFAIGIILILKVHSSLHFSHILLGDMLGISKSDIITTAFFAFISISFLILK 155
           + +S +FS      ++L+    +       LLG + G S SD++       I +  L+L 
Sbjct: 138 IAVSALFSA-LTSLLLLLADPEALQSILFWLLGSLSGASWSDVLILLPLLLIGLLLLLLL 196

Query: 156 KNDLLLMIFDPMHAHSMQIPIKLLHYNFLIVLSLIIVISLKSIGIILPPAVLVLPGATAF 215
              L L+      A S+ + +  +    L++ +L+   ++  +G I    ++V P     
Sbjct: 197 ARKLNLLALGDDVAKSLGVNVNRVRLLLLLLAALLTAAAVALVGPIGFVGLIV-PHIARL 255

Query: 216 LLSKHHTTMILLSVIISVVCTLVGIYISFFINSAAAPTVVILMAIFFVVVYAY 268
           L+  +H  ++ LS +I  +  L+   ++  + +     V I+ A+     + Y
Sbjct: 256 LVGANHRRLLPLSALIGALLLLLADLLARTLLAPIELPVGIVTALIGAPFFIY 308


>gnl|CDD|111273 pfam02364, Glucan_synthase, 1,3-beta-glucan synthase component.
           This family consists of various 1,3-beta-glucan synthase
           components including Gls1, Gls2 and Gls3 from yeast.
           1,3-beta-glucan synthase EC:2.4.1.34 also known as
           callose synthase catalyses the formation of a
           beta-1,3-glucan polymer that is a major component of the
           fungal cell wall. The reaction catalysed is:-
           UDP-glucose + {(1,3)-beta-D-glucosyl}(N) <=> UDP +
           {(1,3)-beta-D-glucosyl}(N+1).
          Length = 817

 Score = 30.1 bits (68), Expect = 0.75
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 218 SKHHTTMILLSVIISVVCTLVGIYISF-FINSAAAPTVVILMAIFFVVVYAYSIII 272
            +     +L S II  +C      I++ FINS    T      I  +++     II
Sbjct: 741 PRATFKNLLFSEIILPLCLFALQLIAYLFINSQNGSTDTPTNLILRLLIITLIPII 796


>gnl|CDD|30954 COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease
           component [Inorganic ion transport and metabolism].
          Length = 334

 Score = 29.5 bits (66), Expect = 0.98
 Identities = 36/179 (20%), Positives = 75/179 (41%), Gaps = 1/179 (0%)

Query: 97  VLSIVFSGMFAIGIILILKVHSSLHFSHILLGDMLGISKSDIITTAFFAFISISFLILKK 156
            LS +F  + ++ +IL     +       LLG + G + SD++       I +  L+   
Sbjct: 154 ALSALFGALTSLLLILADDSLALQAILFWLLGSLGGATWSDVLILLPVILIGLLLLLFLS 213

Query: 157 NDLLLMIFDPMHAHSMQIPIKLLHYNFLIVLSLIIVISLKSIGIILPPAVLVLPGATAFL 216
             L ++      A S+ I +  L    L++ SL+   ++  +G I     L+ P     L
Sbjct: 214 RKLNILSLGDELAKSLGINVNRLRLLLLLLASLLTAAAVSLVGPIGFVG-LIAPHIARLL 272

Query: 217 LSKHHTTMILLSVIISVVCTLVGIYISFFINSAAAPTVVILMAIFFVVVYAYSIIINKR 275
           +   H  ++ LS ++  +  L+   ++  I + A   V I+ A+     + Y +   ++
Sbjct: 273 VGNDHRYLLPLSALLGALLLLLADILARTILAPAEIPVGIVTALIGAPYFIYLLRKKRK 331


>gnl|CDD|37782 KOG2571, KOG2571, KOG2571, Chitin synthase/hyaluronan synthase
           (glycosyltransferases) [Cell wall/membrane/envelope
           biogenesis].
          Length = 862

 Score = 27.3 bits (60), Expect = 5.2
 Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 7/99 (7%)

Query: 182 NFLIVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLS------VIISVVC 235
           N    L    +        IL P  +        LLS    +           ++  ++C
Sbjct: 614 NLHNSLRYHTLHVEMLYFAILGPFFIFSMANFVLLLSFRGRSWNSTVHNLFPILLFILLC 673

Query: 236 TLVGIYISFFINSAAAPTVVILMAIFFVVVYAYSIIINK 274
               +++            ++ M+  + V+  YS++   
Sbjct: 674 LTFSLFMQLLGARPRGNVYMLAMS-LYSVLIIYSLLCAG 711


>gnl|CDD|145462 pfam02322, Cyto_ox_2, Cytochrome oxidase subunit II.  This Family
           consists of cytochrome bd type terminal oxidases that
           catalyses Quinol dependent, Na+ independent oxygen
           uptake. Members of this family are integral membrane
           proteins andi contain a protohaem IX centre B558. One
           member of the family is implicated in having an
           important role in micro-aerobic nitrogen fixation in the
           enteric bacterium Klebsiella pneumoniae.
          Length = 327

 Score = 26.7 bits (60), Expect = 7.6
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 16/84 (19%)

Query: 198 IGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYISFF------------ 245
             +ILP   ++       LL      +  L+  ++ V  ++G+ +S F            
Sbjct: 228 WLLILPALPVLAALLAVLLLRLRREGLAFLASGLAFVLVVLGLAVSLFPYILPSSLDPAS 287

Query: 246 ----INSAAAPTVVILMAIFFVVV 265
                N+A++P  +  M I  ++ 
Sbjct: 288 SLTIWNAASSPYTLKFMLIVALIF 311


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.333    0.146    0.415 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,380,065
Number of extensions: 196411
Number of successful extensions: 1413
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1353
Number of HSP's successfully gapped: 230
Length of query: 277
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 185
Effective length of database: 4,275,709
Effective search space: 791006165
Effective search space used: 791006165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 57 (25.8 bits)