BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780540|ref|YP_003064953.1| ABC transporter, membrane
spanning protein (iron transport) [Candidatus Liberibacter asiaticus
str. psy62]
(277 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780540|ref|YP_003064953.1| ABC transporter, membrane spanning protein (iron transport)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 277
Score = 530 bits (1364), Expect = e-152, Method: Compositional matrix adjust.
Identities = 277/277 (100%), Positives = 277/277 (100%)
Query: 1 MSSFLHYVLLPLTFPAIQNSFIITVIVVIPMSVLSCFIILKNQSFAGEAISHSVLPGIVL 60
MSSFLHYVLLPLTFPAIQNSFIITVIVVIPMSVLSCFIILKNQSFAGEAISHSVLPGIVL
Sbjct: 1 MSSFLHYVLLPLTFPAIQNSFIITVIVVIPMSVLSCFIILKNQSFAGEAISHSVLPGIVL 60
Query: 61 SHMAGIPLEIGAFIAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMFAIGIILILKVHSSL 120
SHMAGIPLEIGAFIAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMFAIGIILILKVHSSL
Sbjct: 61 SHMAGIPLEIGAFIAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMFAIGIILILKVHSSL 120
Query: 121 HFSHILLGDMLGISKSDIITTAFFAFISISFLILKKNDLLLMIFDPMHAHSMQIPIKLLH 180
HFSHILLGDMLGISKSDIITTAFFAFISISFLILKKNDLLLMIFDPMHAHSMQIPIKLLH
Sbjct: 121 HFSHILLGDMLGISKSDIITTAFFAFISISFLILKKNDLLLMIFDPMHAHSMQIPIKLLH 180
Query: 181 YNFLIVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGI 240
YNFLIVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGI
Sbjct: 181 YNFLIVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGI 240
Query: 241 YISFFINSAAAPTVVILMAIFFVVVYAYSIIINKRTA 277
YISFFINSAAAPTVVILMAIFFVVVYAYSIIINKRTA
Sbjct: 241 YISFFINSAAAPTVVILMAIFFVVVYAYSIIINKRTA 277
>gi|254780539|ref|YP_003064952.1| ABC transporter, membrane spanning protein (iron) [Candidatus
Liberibacter asiaticus str. psy62]
Length = 273
Score = 144 bits (363), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 148/253 (58%)
Query: 5 LHYVLLPLTFPAIQNSFIITVIVVIPMSVLSCFIILKNQSFAGEAISHSVLPGIVLSHMA 64
++ +L P T+ + + ++ ++ +LS ++ILK S G ISH++ PGIV+ H
Sbjct: 2 INQILEPFTYNYMNTAIWMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIVVCHRL 61
Query: 65 GIPLEIGAFIAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMFAIGIILILKVHSSLHFSH 124
IPL +GA I+GM+ T +KE + +ED+ +++V+ ++ + ++ S+++ +
Sbjct: 62 NIPLSVGATISGMLATGIMVKIKETTKLREDVAIAVVYIIFYSFAMFMLSLSPSAVYVEN 121
Query: 125 ILLGDMLGISKSDIITTAFFAFISISFLILKKNDLLLMIFDPMHAHSMQIPIKLLHYNFL 184
I LG+ L +S+SD I F + +K D +L+ FD HAHS+ I +KLL F
Sbjct: 122 IFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLLFFDERHAHSVGINVKLLKMLFF 181
Query: 185 IVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYISF 244
+L++ IVI +++GI+L A ++ PGATA L+SK T ++ S ++ + +G YIS+
Sbjct: 182 SLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYISY 241
Query: 245 FINSAAAPTVVIL 257
F++ + +VI+
Sbjct: 242 FLDCSPGGIIVII 254
>gi|254780719|ref|YP_003065132.1| zinc uptake ABC transporter, permease protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 260
Score = 73.6 bits (179), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 126/247 (51%), Gaps = 7/247 (2%)
Query: 27 VVIPMSVLSCFIILKNQSFAGEAISHSVLPGIVLSHMAGIPLEIGAFIAGMICTLSAGYL 86
+V+ L CFII + ++ G+ I+HS L G+ LS + +PL I F+ + +L +
Sbjct: 16 IVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLPLTICIFMIATLTSLVLLQI 75
Query: 87 KEKSYFQEDLVLSIVFSGMFAIG-IILILKVHSSLHFSHILLGDMLGISKSDIITTAFFA 145
++ D +L ++ ++ +IL + + L GD+L ++ +DI+
Sbjct: 76 QKNEALSSDAILGVITHSTISLALVILSFMKWVNTDLTSFLFGDILAVNTTDILLIWGIG 135
Query: 146 FISISFLILKKNDLLLMI--FDPMHAHSMQ-IPIKLLHYNFLIVLSLIIVISLKSIGIIL 202
F++I L LL ++ A MQ IKL+ F+++ SL+I +S+K IGI L
Sbjct: 136 FLNIMILFKIWKPLLATTVNYELAKAEGMQPEKIKLI---FIMITSLMISVSIKFIGITL 192
Query: 203 PPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYISFFINSAAAPTVVILMAIFF 262
++L+LP TA S M +L+ II ++ ++G+Y S ++ + P+++I F
Sbjct: 193 ITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSLIFDTPSGPSIIITSLFLF 252
Query: 263 VVVYAYS 269
++ + Y
Sbjct: 253 ILSFFYK 259
>gi|254780924|ref|YP_003065337.1| potassium-efflux system protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 609
Score = 27.7 bits (60), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 61 SHMAGIPLEIGAFIAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMF 106
S + G+ L +GAF AGMI S +S QE L L FS +F
Sbjct: 251 SKLFGVSLSLGAFFAGMILAESE---LSQSAAQESLPLRDAFSVLF 293
>gi|254780542|ref|YP_003064955.1| hypothetical protein CLIBASIA_02145 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 210
Score = 24.3 bits (51), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 102 FSGMFAI-GIILILKV--HSSLHFSHILLGDMLGISKSDIITTAFFAFISISFLILKK 156
F+GM I G +L V + S F +++ M+ S+ D AF+SIS + +
Sbjct: 32 FAGMDKITGRVLTFDVEINQSAQFGSLIIKPMVCYSRDDREAQRIDAFVSISEIFTDR 89
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.333 0.146 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171,234
Number of Sequences: 1233
Number of extensions: 7283
Number of successful extensions: 47
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 21
length of query: 277
length of database: 328,796
effective HSP length: 73
effective length of query: 204
effective length of database: 238,787
effective search space: 48712548
effective search space used: 48712548
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 38 (19.2 bits)