Query gi|254780542|ref|YP_003064955.1| hypothetical protein CLIBASIA_02145 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 210 No_of_seqs 121 out of 549 Neff 4.0 Searched_HMMs 23785 Date Tue May 31 19:40:33 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780542.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1brv_A Protein G, BRSV-G regio 21.9 19 0.00079 15.5 0.4 10 199-208 1-10 (32) 2 3cfu_A Uncharacterized lipopro 17.0 46 0.0019 13.0 6.2 54 48-101 3-71 (159) 3 1y0g_A Protein YCEI; lipid bin 16.2 43 0.0018 13.2 1.2 21 1-21 1-21 (191) 4 3fbk_A RGS3, RGP3, regulator o 11.3 66 0.0028 12.0 5.2 58 52-116 23-80 (153) 5 3c85_A Putative glutathione-re 10.7 45 0.0019 13.1 0.0 14 102-116 2-15 (183) 6 2a87_A TRXR, TR, thioredoxin r 10.7 69 0.0029 11.9 1.7 34 36-70 96-129 (335) 7 2d4p_A Hypothetical protein TT 9.3 59 0.0025 12.4 0.2 13 107-119 86-98 (141) 8 2dmh_A Myoferlin; beta-sandwic 9.3 78 0.0033 11.6 3.8 32 52-83 3-34 (140) 9 1odf_A YGR205W, hypothetical 3 9.3 76 0.0032 11.6 0.7 31 89-119 152-183 (290) 10 3dnx_A Uncharacterized protein 9.0 64 0.0027 12.1 0.3 21 113-133 51-71 (153) No 1 >1brv_A Protein G, BRSV-G region; attachment protein G of bovine respiratory syncytial virus, immunoglobulin-binding protein; NMR {Bovine respiratory syncytial virus} SCOP: j.33.1.1 Probab=21.86 E-value=19 Score=15.46 Aligned_cols=10 Identities=60% Similarity=0.860 Sum_probs=5.8 Q ss_pred CCCCCCCEEE Q ss_conf 7223452152 Q gi|254780542|r 199 NEQDHNDVQI 208 (210) Q Consensus 199 ~~~~~~~~~~ 208 (210) |.||||+.|+ T Consensus 1 nhqdh~n~qt 10 (32) T 1brv_A 1 NHQDHNNFQT 10 (32) T ss_pred CCCCCCCCCC T ss_conf 9635465430 No 2 >3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis} Probab=17.03 E-value=46 Score=13.04 Aligned_cols=54 Identities=9% Similarity=-0.072 Sum_probs=31.1 Q ss_pred ECCCEEEECCEEEEEEECCCCCCCC--------------CCCCEEEEEEEE-ECCCCCCCEEECCCEEE Q ss_conf 0798589632799998401689888--------------876169999996-03577631444275752 Q gi|254780542|r 48 EINQSAQFGSLIIKPMVCYSRDDRE--------------AQRIDAFVSISE-IFTDRIVRSIFSGWMFA 101 (210) Q Consensus 48 ~vGe~~~FG~L~I~v~~C~~~~p~e--------------~pe~~Ayl~I~d-~~~~~~~~~IF~GWMfA 101 (210) ++|++++.|+++++|..-......+ +.+..-|+.|.- +.+..+...-|++-+|. T Consensus 3 kIGetv~~~~~~~TVn~V~~~~~~e~~~~~~~~~~~~~~p~~g~~fl~V~vtV~N~g~e~~~~s~~~F~ 71 (159) T 3cfu_A 3 KIGETFKAGHTNFTVNKVDRVQKGEYMNVGGAVNEETKTIKDDEERLIIEVTMENIGEDSISYNFIGFD 71 (159) T ss_dssp CTTCEEEETTEEEEEEEEEEECSSCBEESSCC------CBCCCSEEEEEEEEEEECSSSCEEEEGGGEE T ss_pred CCCCEEEECCEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEECCCCEE T ss_conf 147528989999999899972685042023444555457789999999999999777882576564329 No 3 >1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme, dehydrogenase, hydrolase, predicted, structural genomics; HET: 8PP; 2.20A {Escherichia coli} SCOP: b.61.6.1 Probab=16.18 E-value=43 Score=13.21 Aligned_cols=21 Identities=29% Similarity=0.097 Sum_probs=12.5 Q ss_pred CCHHHHHHHHHHHHHHHHHCC Q ss_conf 914789999999986442101 Q gi|254780542|r 1 MKYRVLLLILFFVFSHAKFAN 21 (210) Q Consensus 1 MK~~ILlLilFfifs~~~~A~ 21 (210) ||..++.+.+..++..+..+. T Consensus 1 Mkk~~~~l~~~~l~~~~~~a~ 21 (191) T 1y0g_A 1 MKKSLLGLTFASLMFSAGSAV 21 (191) T ss_dssp --------------------- T ss_pred CCHHHHHHHHHHHHHHHCCCC T ss_conf 933699999999997602203 No 4 >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Probab=11.29 E-value=66 Score=12.03 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=33.5 Q ss_pred EEEECCEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCEEECCCEEEECCCCCCCCCCCEEE Q ss_conf 58963279999840168988887616999999603577631444275752075788233852148 Q gi|254780542|r 52 SAQFGSLIIKPMVCYSRDDREAQRIDAFVSISEIFTDRIVRSIFSGWMFADSPAMNAIDHSIYDI 116 (210) Q Consensus 52 ~~~FG~L~I~v~~C~~~~p~e~pe~~Ayl~I~d~~~~~~~~~IF~GWMfASSPsLnalEHPvYDI 116 (210) ...=+.|.|.+.+|..-++.+......|+.|.-....... .. ..+..+..--+|+||= T Consensus 23 ~~~~~~L~V~V~~a~nL~~~~~~~~dpYVkv~l~~~~~~~-~~------~kT~v~~~t~~P~w~e 80 (153) T 3fbk_A 23 DAQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRL-RH------QKTQTVPDCRDPAFHE 80 (153) T ss_dssp EESSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCT-TC------EECCCCTTCSSCEEEE T ss_pred ECCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCC-EE------ECCCEECCCCCCCCCE T ss_conf 8889999999997928998899995925999996588985-69------7351785889976125 No 5 >3c85_A Putative glutathione-regulated potassium-efflux system protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} Probab=10.72 E-value=45 Score=13.08 Aligned_cols=14 Identities=36% Similarity=0.866 Sum_probs=7.5 Q ss_pred ECCCCCCCCCCCEEE Q ss_conf 075788233852148 Q gi|254780542|r 102 DSPAMNAIDHSIYDI 116 (210) Q Consensus 102 SSPsLnalEHPvYDI 116 (210) |+| ||.+-|++|.- T Consensus 2 ~ap-L~~~~~~i~~~ 15 (183) T 3c85_A 2 NAP-LNRLGHKIYQH 15 (183) T ss_dssp --------------- T ss_pred CCC-HHHHHHHHHHH T ss_conf 975-37777999999 No 6 >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreductase, structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Probab=10.71 E-value=69 Score=11.91 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=18.8 Q ss_pred ECCCCEEEEEEEECCCEEEECCEEEEEEECCCCCC Q ss_conf 34345048999707985896327999984016898 Q gi|254780542|r 36 DKITGRVLTFDVEINQSAQFGSLIIKPMVCYSRDD 70 (210) Q Consensus 36 DKITakvs~ieI~vGe~~~FG~L~I~v~~C~~~~p 70 (210) .++.+....+....|....+..+.+. ..+.-+.| T Consensus 96 ~~~~~~~~~~~~~~g~~~~~~~~i~a-tG~~~~~~ 129 (335) T 2a87_A 96 VSLHGPLKSVVTADGQTHRARAVILA-MGAAARYL 129 (335) T ss_dssp EECSSSSEEEEETTSCEEEEEEEEEC-CCEEECCC T ss_pred EECCCCCCEEEECCCCEEEEEEEEEE-CCCCCCCC T ss_conf 21158742378369849996579995-25666678 No 7 >2d4p_A Hypothetical protein TTHA1254; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Thermus thermophilus HB8} SCOP: d.108.1.1 PDB: 2d4o_A Probab=9.31 E-value=59 Score=12.35 Aligned_cols=13 Identities=31% Similarity=0.582 Sum_probs=11.2 Q ss_pred CCCCCCCEEEEEE Q ss_conf 8233852148986 Q gi|254780542|r 107 NAIDHSIYDIWLM 119 (210) Q Consensus 107 nalEHPvYDIWvl 119 (210) |+.|-.|||+|+- T Consensus 86 SAYDa~VYev~~~ 98 (141) T 2d4p_A 86 SAYDAGVYEVALH 98 (141) T ss_dssp HHHHTTCSEEEEC T ss_pred HHHCCEEEEEEEE T ss_conf 6523424799852 No 8 >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=9.30 E-value=78 Score=11.58 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=24.3 Q ss_pred EEEECCEEEEEEECCCCCCCCCCCCEEEEEEE Q ss_conf 58963279999840168988887616999999 Q gi|254780542|r 52 SAQFGSLIIKPMVCYSRDDREAQRIDAFVSIS 83 (210) Q Consensus 52 ~~~FG~L~I~v~~C~~~~p~e~pe~~Ayl~I~ 83 (210) +..-|.|.|++..|..-+....-..+.|+.|. T Consensus 3 ~g~~g~L~V~v~~A~~L~~~~~g~~DPyv~v~ 34 (140) T 2dmh_A 3 SGSSGMLRVIVESASNIPKTKFGKPDPIVSVI 34 (140) T ss_dssp SCBCCEEEEEEEEEESCCCCSSSCCCEEEEEE T ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCEEEEEE T ss_conf 79868999999978895987689989699999 No 9 >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Probab=9.30 E-value=76 Score=11.64 Aligned_cols=31 Identities=16% Similarity=0.413 Sum_probs=19.4 Q ss_pred CCCCEEECCCEEEECCCCCCCCC-CCEEEEEE Q ss_conf 76314442757520757882338-52148986 Q gi|254780542|r 89 RIVRSIFSGWMFADSPAMNAIDH-SIYDIWLM 119 (210) Q Consensus 89 ~~~~~IF~GWMfASSPsLnalEH-PvYDIWvl 119 (210) ..+..||.||+.-..|-....++ +.+..|.. T Consensus 152 p~dvvI~EGw~vG~~p~~~~~~~~~~~~~~~~ 183 (290) T 1odf_A 152 PVDIFILEGWFLGFNPILQGIENNDLLTGDMV 183 (290) T ss_dssp SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHH T ss_pred CCCEEEEEHHHCCCCCCCHHHHHCCCCHHHHH T ss_conf 98789983021278764224440330036677 No 10 >3dnx_A Uncharacterized protein SPO1766; structural genomics, APC88088, protein of unknown function, PSI-2, protein structure initiative; HET: MSE; 1.94A {Silicibacter pomeroyi} Probab=8.99 E-value=64 Score=12.11 Aligned_cols=21 Identities=24% Similarity=0.624 Sum_probs=13.4 Q ss_pred CEEEEEEECCCCCCCCCCHHC Q ss_conf 214898613478883200000 Q gi|254780542|r 113 IYDIWLMQCKDPINDSISNSE 133 (210) Q Consensus 113 vYDIWvl~Ck~p~~~~~~~~~ 133 (210) -=+||++.||..+.|=.+..+ T Consensus 51 ~Gei~IVEiKSS~aDF~~D~K 71 (153) T 3dnx_A 51 KGEIWVIECKSSRADFQADAK 71 (153) T ss_dssp TCCEEEEEECSSHHHHHHTTT T ss_pred CCCEEEEEEECCHHHHCCCCC T ss_conf 996999998477889615455 Done!