Query gi|254780542|ref|YP_003064955.1| hypothetical protein CLIBASIA_02145 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 210
No_of_seqs 121 out of 549
Neff 4.0
Searched_HMMs 23785
Date Tue May 31 19:40:33 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780542.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1brv_A Protein G, BRSV-G regio 21.9 19 0.00079 15.5 0.4 10 199-208 1-10 (32)
2 3cfu_A Uncharacterized lipopro 17.0 46 0.0019 13.0 6.2 54 48-101 3-71 (159)
3 1y0g_A Protein YCEI; lipid bin 16.2 43 0.0018 13.2 1.2 21 1-21 1-21 (191)
4 3fbk_A RGS3, RGP3, regulator o 11.3 66 0.0028 12.0 5.2 58 52-116 23-80 (153)
5 3c85_A Putative glutathione-re 10.7 45 0.0019 13.1 0.0 14 102-116 2-15 (183)
6 2a87_A TRXR, TR, thioredoxin r 10.7 69 0.0029 11.9 1.7 34 36-70 96-129 (335)
7 2d4p_A Hypothetical protein TT 9.3 59 0.0025 12.4 0.2 13 107-119 86-98 (141)
8 2dmh_A Myoferlin; beta-sandwic 9.3 78 0.0033 11.6 3.8 32 52-83 3-34 (140)
9 1odf_A YGR205W, hypothetical 3 9.3 76 0.0032 11.6 0.7 31 89-119 152-183 (290)
10 3dnx_A Uncharacterized protein 9.0 64 0.0027 12.1 0.3 21 113-133 51-71 (153)
No 1
>1brv_A Protein G, BRSV-G region; attachment protein G of bovine respiratory syncytial virus, immunoglobulin-binding protein; NMR {Bovine respiratory syncytial virus} SCOP: j.33.1.1
Probab=21.86 E-value=19 Score=15.46 Aligned_cols=10 Identities=60% Similarity=0.860 Sum_probs=5.8
Q ss_pred CCCCCCCEEE
Q ss_conf 7223452152
Q gi|254780542|r 199 NEQDHNDVQI 208 (210)
Q Consensus 199 ~~~~~~~~~~ 208 (210)
|.||||+.|+
T Consensus 1 nhqdh~n~qt 10 (32)
T 1brv_A 1 NHQDHNNFQT 10 (32)
T ss_pred CCCCCCCCCC
T ss_conf 9635465430
No 2
>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis}
Probab=17.03 E-value=46 Score=13.04 Aligned_cols=54 Identities=9% Similarity=-0.072 Sum_probs=31.1
Q ss_pred ECCCEEEECCEEEEEEECCCCCCCC--------------CCCCEEEEEEEE-ECCCCCCCEEECCCEEE
Q ss_conf 0798589632799998401689888--------------876169999996-03577631444275752
Q gi|254780542|r 48 EINQSAQFGSLIIKPMVCYSRDDRE--------------AQRIDAFVSISE-IFTDRIVRSIFSGWMFA 101 (210)
Q Consensus 48 ~vGe~~~FG~L~I~v~~C~~~~p~e--------------~pe~~Ayl~I~d-~~~~~~~~~IF~GWMfA 101 (210)
++|++++.|+++++|..-......+ +.+..-|+.|.- +.+..+...-|++-+|.
T Consensus 3 kIGetv~~~~~~~TVn~V~~~~~~e~~~~~~~~~~~~~~p~~g~~fl~V~vtV~N~g~e~~~~s~~~F~ 71 (159)
T 3cfu_A 3 KIGETFKAGHTNFTVNKVDRVQKGEYMNVGGAVNEETKTIKDDEERLIIEVTMENIGEDSISYNFIGFD 71 (159)
T ss_dssp CTTCEEEETTEEEEEEEEEEECSSCBEESSCC------CBCCCSEEEEEEEEEEECSSSCEEEEGGGEE
T ss_pred CCCCEEEECCEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEECCCCEE
T ss_conf 147528989999999899972685042023444555457789999999999999777882576564329
No 3
>1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme, dehydrogenase, hydrolase, predicted, structural genomics; HET: 8PP; 2.20A {Escherichia coli} SCOP: b.61.6.1
Probab=16.18 E-value=43 Score=13.21 Aligned_cols=21 Identities=29% Similarity=0.097 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 914789999999986442101
Q gi|254780542|r 1 MKYRVLLLILFFVFSHAKFAN 21 (210)
Q Consensus 1 MK~~ILlLilFfifs~~~~A~ 21 (210)
||..++.+.+..++..+..+.
T Consensus 1 Mkk~~~~l~~~~l~~~~~~a~ 21 (191)
T 1y0g_A 1 MKKSLLGLTFASLMFSAGSAV 21 (191)
T ss_dssp ---------------------
T ss_pred CCHHHHHHHHHHHHHHHCCCC
T ss_conf 933699999999997602203
No 4
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens}
Probab=11.29 E-value=66 Score=12.03 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=33.5
Q ss_pred EEEECCEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCEEECCCEEEECCCCCCCCCCCEEE
Q ss_conf 58963279999840168988887616999999603577631444275752075788233852148
Q gi|254780542|r 52 SAQFGSLIIKPMVCYSRDDREAQRIDAFVSISEIFTDRIVRSIFSGWMFADSPAMNAIDHSIYDI 116 (210)
Q Consensus 52 ~~~FG~L~I~v~~C~~~~p~e~pe~~Ayl~I~d~~~~~~~~~IF~GWMfASSPsLnalEHPvYDI 116 (210)
...=+.|.|.+.+|..-++.+......|+.|.-....... .. ..+..+..--+|+||=
T Consensus 23 ~~~~~~L~V~V~~a~nL~~~~~~~~dpYVkv~l~~~~~~~-~~------~kT~v~~~t~~P~w~e 80 (153)
T 3fbk_A 23 DAQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRL-RH------QKTQTVPDCRDPAFHE 80 (153)
T ss_dssp EESSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCT-TC------EECCCCTTCSSCEEEE
T ss_pred ECCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCC-EE------ECCCEECCCCCCCCCE
T ss_conf 8889999999997928998899995925999996588985-69------7351785889976125
No 5
>3c85_A Putative glutathione-regulated potassium-efflux system protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=10.72 E-value=45 Score=13.08 Aligned_cols=14 Identities=36% Similarity=0.866 Sum_probs=7.5
Q ss_pred ECCCCCCCCCCCEEE
Q ss_conf 075788233852148
Q gi|254780542|r 102 DSPAMNAIDHSIYDI 116 (210)
Q Consensus 102 SSPsLnalEHPvYDI 116 (210)
|+| ||.+-|++|.-
T Consensus 2 ~ap-L~~~~~~i~~~ 15 (183)
T 3c85_A 2 NAP-LNRLGHKIYQH 15 (183)
T ss_dssp ---------------
T ss_pred CCC-HHHHHHHHHHH
T ss_conf 975-37777999999
No 6
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreductase, structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=10.71 E-value=69 Score=11.91 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=18.8
Q ss_pred ECCCCEEEEEEEECCCEEEECCEEEEEEECCCCCC
Q ss_conf 34345048999707985896327999984016898
Q gi|254780542|r 36 DKITGRVLTFDVEINQSAQFGSLIIKPMVCYSRDD 70 (210)
Q Consensus 36 DKITakvs~ieI~vGe~~~FG~L~I~v~~C~~~~p 70 (210)
.++.+....+....|....+..+.+. ..+.-+.|
T Consensus 96 ~~~~~~~~~~~~~~g~~~~~~~~i~a-tG~~~~~~ 129 (335)
T 2a87_A 96 VSLHGPLKSVVTADGQTHRARAVILA-MGAAARYL 129 (335)
T ss_dssp EECSSSSEEEEETTSCEEEEEEEEEC-CCEEECCC
T ss_pred EECCCCCCEEEECCCCEEEEEEEEEE-CCCCCCCC
T ss_conf 21158742378369849996579995-25666678
No 7
>2d4p_A Hypothetical protein TTHA1254; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Thermus thermophilus HB8} SCOP: d.108.1.1 PDB: 2d4o_A
Probab=9.31 E-value=59 Score=12.35 Aligned_cols=13 Identities=31% Similarity=0.582 Sum_probs=11.2
Q ss_pred CCCCCCCEEEEEE
Q ss_conf 8233852148986
Q gi|254780542|r 107 NAIDHSIYDIWLM 119 (210)
Q Consensus 107 nalEHPvYDIWvl 119 (210)
|+.|-.|||+|+-
T Consensus 86 SAYDa~VYev~~~ 98 (141)
T 2d4p_A 86 SAYDAGVYEVALH 98 (141)
T ss_dssp HHHHTTCSEEEEC
T ss_pred HHHCCEEEEEEEE
T ss_conf 6523424799852
No 8
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=9.30 E-value=78 Score=11.58 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=24.3
Q ss_pred EEEECCEEEEEEECCCCCCCCCCCCEEEEEEE
Q ss_conf 58963279999840168988887616999999
Q gi|254780542|r 52 SAQFGSLIIKPMVCYSRDDREAQRIDAFVSIS 83 (210)
Q Consensus 52 ~~~FG~L~I~v~~C~~~~p~e~pe~~Ayl~I~ 83 (210)
+..-|.|.|++..|..-+....-..+.|+.|.
T Consensus 3 ~g~~g~L~V~v~~A~~L~~~~~g~~DPyv~v~ 34 (140)
T 2dmh_A 3 SGSSGMLRVIVESASNIPKTKFGKPDPIVSVI 34 (140)
T ss_dssp SCBCCEEEEEEEEEESCCCCSSSCCCEEEEEE
T ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCEEEEEE
T ss_conf 79868999999978895987689989699999
No 9
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=9.30 E-value=76 Score=11.64 Aligned_cols=31 Identities=16% Similarity=0.413 Sum_probs=19.4
Q ss_pred CCCCEEECCCEEEECCCCCCCCC-CCEEEEEE
Q ss_conf 76314442757520757882338-52148986
Q gi|254780542|r 89 RIVRSIFSGWMFADSPAMNAIDH-SIYDIWLM 119 (210)
Q Consensus 89 ~~~~~IF~GWMfASSPsLnalEH-PvYDIWvl 119 (210)
..+..||.||+.-..|-....++ +.+..|..
T Consensus 152 p~dvvI~EGw~vG~~p~~~~~~~~~~~~~~~~ 183 (290)
T 1odf_A 152 PVDIFILEGWFLGFNPILQGIENNDLLTGDMV 183 (290)
T ss_dssp SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHH
T ss_pred CCCEEEEEHHHCCCCCCCHHHHHCCCCHHHHH
T ss_conf 98789983021278764224440330036677
No 10
>3dnx_A Uncharacterized protein SPO1766; structural genomics, APC88088, protein of unknown function, PSI-2, protein structure initiative; HET: MSE; 1.94A {Silicibacter pomeroyi}
Probab=8.99 E-value=64 Score=12.11 Aligned_cols=21 Identities=24% Similarity=0.624 Sum_probs=13.4
Q ss_pred CEEEEEEECCCCCCCCCCHHC
Q ss_conf 214898613478883200000
Q gi|254780542|r 113 IYDIWLMQCKDPINDSISNSE 133 (210)
Q Consensus 113 vYDIWvl~Ck~p~~~~~~~~~ 133 (210)
-=+||++.||..+.|=.+..+
T Consensus 51 ~Gei~IVEiKSS~aDF~~D~K 71 (153)
T 3dnx_A 51 KGEIWVIECKSSRADFQADAK 71 (153)
T ss_dssp TCCEEEEEECSSHHHHHHTTT
T ss_pred CCCEEEEEEECCHHHHCCCCC
T ss_conf 996999998477889615455
Done!