Query gi|254780542|ref|YP_003064955.1| hypothetical protein CLIBASIA_02145 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 210 No_of_seqs 121 out of 549 Neff 4.0 Searched_HMMs 13730 Date Wed Jun 1 09:27:03 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780542.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2oqea3 d.17.2.1 (A:116-236) C 25.7 17 0.0013 14.2 2.5 29 89-118 50-79 (121) 2 d1pvma3 g.41.13.1 (A:143-178) 17.6 26 0.0019 13.1 1.9 16 112-127 14-33 (36) 3 d1ei5a2 b.61.3.1 (A:418-520) D 13.5 33 0.0024 12.5 1.5 15 114-128 52-66 (103) 4 d1d4ua2 g.39.1.5 (A:1-36) DNA 13.2 33 0.0024 12.4 1.4 23 97-123 12-34 (36) 5 d1odfa_ c.37.1.6 (A:) Hypothet 13.0 29 0.0021 12.8 0.8 23 89-111 148-170 (286) 6 d1w2za3 d.17.2.1 (A:99-206) Co 12.6 35 0.0025 12.3 2.2 33 89-121 50-83 (108) 7 d1s1ma2 c.37.1.10 (A:1-266) CT 11.6 33 0.0024 12.4 0.8 18 114-131 205-222 (266) 8 d1d6za3 d.17.2.1 (A:186-300) C 10.5 41 0.003 11.9 1.9 52 90-155 53-105 (115) 9 d1l2ha_ b.42.1.2 (A:) Interleu 10.0 42 0.0031 11.7 0.9 13 94-106 113-125 (149) 10 d1md6a_ b.42.1.2 (A:) Interleu 9.2 45 0.0033 11.6 1.0 14 106-119 107-120 (154) No 1 >d2oqea3 d.17.2.1 (A:116-236) Copper amine oxidase, domains 1 and 2 {Yeast (Hansenula polymorpha) [TaxId: 4905]} Probab=25.74 E-value=17 Score=14.17 Aligned_cols=29 Identities=7% Similarity=0.135 Sum_probs=23.3 Q ss_pred CCCCEEECCCEEE-ECCCCCCCCCCCEEEEE Q ss_conf 7631444275752-07578823385214898 Q gi|254780542|r 89 RIVRSIFSGWMFA-DSPAMNAIDHSIYDIWL 118 (210) Q Consensus 89 ~~~~~IF~GWMfA-SSPsLnalEHPvYDIWv 118 (210) ...+.+++++||. ++|.-|..-||+ |+-+ T Consensus 50 ~~~rRl~~~~~~~r~~~~~N~YA~Pi-el~~ 79 (121) T d2oqea3 50 GTGKRLQQALVYYRSDEDDSQYSHPL-DFCP 79 (121) T ss_dssp TTSSCEEEEEEEECSSTTSCGGGCBC-SCEE T ss_pred CCCCEEEEEEEEEECCCCCCCCCCEE-CEEE T ss_conf 89862899997663499987465522-4489 No 2 >d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Probab=17.63 E-value=26 Score=13.12 Aligned_cols=16 Identities=31% Similarity=0.883 Sum_probs=8.8 Q ss_pred CCEE----EEEEECCCCCCC Q ss_conf 5214----898613478883 Q gi|254780542|r 112 SIYD----IWLMQCKDPIND 127 (210) Q Consensus 112 PvYD----IWvl~Ck~p~~~ 127 (210) |+|| |.+.+|.||--| T Consensus 14 pvy~~kgeikvfrcsnpacd 33 (36) T d1pvma3 14 PVYNEKGEIKVFRCSNPACD 33 (36) T ss_dssp EEECTTSCEEEEEESCTTCC T ss_pred EEECCCCCEEEEECCCCCCC T ss_conf 71157772889972797666 No 3 >d1ei5a2 b.61.3.1 (A:418-520) D-aminopeptidase, middle and C-terminal domains {Ochrobactrum anthropi [TaxId: 529]} Probab=13.49 E-value=33 Score=12.45 Aligned_cols=15 Identities=20% Similarity=0.736 Sum_probs=11.0 Q ss_pred EEEEEEECCCCCCCC Q ss_conf 148986134788832 Q gi|254780542|r 114 YDIWLMQCKDPINDS 128 (210) Q Consensus 114 YDIWvl~Ck~p~~~~ 128 (210) =|||++.|.-..+.. T Consensus 52 ~DvW~L~~~R~mDAp 66 (103) T d1ei5a2 52 SDVWLLPVQRSMDAP 66 (103) T ss_dssp TTEEEEEECCCSSSS T ss_pred CCEEEEECCCCCCCC T ss_conf 946998655547998 No 4 >d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Probab=13.21 E-value=33 Score=12.40 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=18.2 Q ss_pred CCEEEECCCCCCCCCCCEEEEEEECCC Q ss_conf 757520757882338521489861347 Q gi|254780542|r 97 GWMFADSPAMNAIDHSIYDIWLMQCKD 123 (210) Q Consensus 97 GWMfASSPsLnalEHPvYDIWvl~Ck~ 123 (210) |=.|+-|=-+|.|+|||-| .|+. T Consensus 12 g~~F~DSYL~~~Fd~~vCD----~CRD 34 (36) T d1d4ua2 12 GKEFMDSYLMDHFDLPTCD----DCRD 34 (36) T ss_dssp CCEESCSSSTTTTSCCCCT----TTCS T ss_pred CCHHHHHHHHHCCCCHHCC----CCCC T ss_conf 7377899999738950114----3547 No 5 >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=12.96 E-value=29 Score=12.76 Aligned_cols=23 Identities=22% Similarity=0.585 Sum_probs=16.8 Q ss_pred CCCCEEECCCEEEECCCCCCCCC Q ss_conf 76314442757520757882338 Q gi|254780542|r 89 RIVRSIFSGWMFADSPAMNAIDH 111 (210) Q Consensus 89 ~~~~~IF~GWMfASSPsLnalEH 111 (210) ..+..||.||+.-..|-.+..+. T Consensus 148 ~~dviI~EGWcvG~~p~~~~~~~ 170 (286) T d1odfa_ 148 PVDIFILEGWFLGFNPILQGIEN 170 (286) T ss_dssp SCSEEEEEESSTTCCCCCSCTTT T ss_pred CCCEEEEECHHHCCCCHHHHHHC T ss_conf 98789970022045412445530 No 6 >d1w2za3 d.17.2.1 (A:99-206) Copper amine oxidase, domains 1 and 2 {Pea seedling (Pisum sativum) [TaxId: 3888]} Probab=12.61 E-value=35 Score=12.29 Aligned_cols=33 Identities=12% Similarity=-0.039 Sum_probs=25.2 Q ss_pred CCCCEEECCCEEEECCCCCCCCCCCEEEE-EEEC Q ss_conf 76314442757520757882338521489-8613 Q gi|254780542|r 89 RIVRSIFSGWMFADSPAMNAIDHSIYDIW-LMQC 121 (210) Q Consensus 89 ~~~~~IF~GWMfASSPsLnalEHPvYDIW-vl~C 121 (210) .+.+.++++.||...|.-|..-||+=-+- +++. T Consensus 50 e~~~Rl~~~~~f~r~~~~N~YA~PIeGl~~vVDl 83 (108) T d1w2za3 50 EKNVRTVRLDCFMKESTVNIYVRPITGITIVADL 83 (108) T ss_dssp SCCCCEEEEEEEECTTCSCGGGSBCCSEEEEEET T ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEC T ss_conf 8896589999877569987252314850899988 No 7 >d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=11.64 E-value=33 Score=12.40 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=15.2 Q ss_pred EEEEEEECCCCCCCCCCH Q ss_conf 148986134788832000 Q gi|254780542|r 114 YDIWLMQCKDPINDSISN 131 (210) Q Consensus 114 YDIWvl~Ck~p~~~~~~~ 131 (210) -|+++.||+.|+++.+-+ T Consensus 205 PDilvcRse~~l~~~~k~ 222 (266) T d1s1ma2 205 PDILICRSDRAVPANERA 222 (266) T ss_dssp CSEEEEEESSCCCHHHHH T ss_pred CCEEEECCCCCCCHHHHH T ss_conf 875763365579988999 No 8 >d1d6za3 d.17.2.1 (A:186-300) Copper amine oxidase, domains 1 and 2 {Escherichia coli [TaxId: 562]} Probab=10.50 E-value=41 Score=11.86 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=33.2 Q ss_pred CCCEEECCCEEEECCCCCCCCCCCEEEE-EEECCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 6314442757520757882338521489-86134788832000003440000000368842357101 Q gi|254780542|r 90 IVRSIFSGWMFADSPAMNAIDHSIYDIW-LMQCKDPINDSISNSESISKKALSEYSSTDITSQGSEK 155 (210) Q Consensus 90 ~~~~IF~GWMfASSPsLnalEHPvYDIW-vl~Ck~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (210) ....+.+++||..+|.-|..-||+=-+- ++++.. +..-+..+.++..+|.+. T Consensus 53 ~~~Rl~~~~~f~~~~~~N~YA~PIeGl~~vvDl~~--------------~~Vi~i~D~~~vpvP~~~ 105 (115) T d1d6za3 53 QDARLLKVISYLDVGDGNYWAHPIENLVAVVDLEQ--------------KKIVKIEEGPVVPVPMTA 105 (115) T ss_dssp SSSCEEEEEEEECCSSSCGGGSEEEEEEEEEETTT--------------TEEEEEEECCCCCCCCSC T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCC--------------CEEEEEECCCCCCCCCCC T ss_conf 78538999997858999856252586189998998--------------989999778876389998 No 9 >d1l2ha_ b.42.1.2 (A:) Interleukin-1beta {Human (Homo sapiens) [TaxId: 9606]} Probab=10.00 E-value=42 Score=11.75 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=8.1 Q ss_pred EECCCEEEECCCC Q ss_conf 4427575207578 Q gi|254780542|r 94 IFSGWMFADSPAM 106 (210) Q Consensus 94 IF~GWMfASSPsL 106 (210) -|-||.++.|+.= T Consensus 113 a~PgWFIsTs~~~ 125 (149) T d1l2ha_ 113 QFPNFYISTSQAE 125 (149) T ss_dssp SSTTCBEEBCSST T ss_pred CCCCCEEECCCCC T ss_conf 6899689748768 No 10 >d1md6a_ b.42.1.2 (A:) Interleukin-1F5 {Mouse (Mus musculus) [TaxId: 10090]} Probab=9.19 E-value=45 Score=11.56 Aligned_cols=14 Identities=14% Similarity=0.638 Sum_probs=5.8 Q ss_pred CCCCCCCCEEEEEE Q ss_conf 88233852148986 Q gi|254780542|r 106 MNAIDHSIYDIWLM 119 (210) Q Consensus 106 LnalEHPvYDIWvl 119 (210) .+.||..-|==|-+ T Consensus 107 t~tfESaa~PgWFI 120 (154) T d1md6a_ 107 TSSFESAAYPGWFL 120 (154) T ss_dssp CEEEEESSSTTCEE T ss_pred EEEEEECCCCCCEE T ss_conf 36898545799579 Done!