Query         gi|254780542|ref|YP_003064955.1| hypothetical protein CLIBASIA_02145 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 210
No_of_seqs    121 out of 549
Neff          4.0 
Searched_HMMs 13730
Date          Wed Jun  1 09:27:03 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780542.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2oqea3 d.17.2.1 (A:116-236) C  25.7      17  0.0013   14.2   2.5   29   89-118    50-79  (121)
  2 d1pvma3 g.41.13.1 (A:143-178)   17.6      26  0.0019   13.1   1.9   16  112-127    14-33  (36)
  3 d1ei5a2 b.61.3.1 (A:418-520) D  13.5      33  0.0024   12.5   1.5   15  114-128    52-66  (103)
  4 d1d4ua2 g.39.1.5 (A:1-36) DNA   13.2      33  0.0024   12.4   1.4   23   97-123    12-34  (36)
  5 d1odfa_ c.37.1.6 (A:) Hypothet  13.0      29  0.0021   12.8   0.8   23   89-111   148-170 (286)
  6 d1w2za3 d.17.2.1 (A:99-206) Co  12.6      35  0.0025   12.3   2.2   33   89-121    50-83  (108)
  7 d1s1ma2 c.37.1.10 (A:1-266) CT  11.6      33  0.0024   12.4   0.8   18  114-131   205-222 (266)
  8 d1d6za3 d.17.2.1 (A:186-300) C  10.5      41   0.003   11.9   1.9   52   90-155    53-105 (115)
  9 d1l2ha_ b.42.1.2 (A:) Interleu  10.0      42  0.0031   11.7   0.9   13   94-106   113-125 (149)
 10 d1md6a_ b.42.1.2 (A:) Interleu   9.2      45  0.0033   11.6   1.0   14  106-119   107-120 (154)

No 1  
>d2oqea3 d.17.2.1 (A:116-236) Copper amine oxidase, domains 1 and 2 {Yeast (Hansenula polymorpha) [TaxId: 4905]}
Probab=25.74  E-value=17  Score=14.17  Aligned_cols=29  Identities=7%  Similarity=0.135  Sum_probs=23.3

Q ss_pred             CCCCEEECCCEEE-ECCCCCCCCCCCEEEEE
Q ss_conf             7631444275752-07578823385214898
Q gi|254780542|r   89 RIVRSIFSGWMFA-DSPAMNAIDHSIYDIWL  118 (210)
Q Consensus        89 ~~~~~IF~GWMfA-SSPsLnalEHPvYDIWv  118 (210)
                      ...+.+++++||. ++|.-|..-||+ |+-+
T Consensus        50 ~~~rRl~~~~~~~r~~~~~N~YA~Pi-el~~   79 (121)
T d2oqea3          50 GTGKRLQQALVYYRSDEDDSQYSHPL-DFCP   79 (121)
T ss_dssp             TTSSCEEEEEEEECSSTTSCGGGCBC-SCEE
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCCEE-CEEE
T ss_conf             89862899997663499987465522-4489


No 2  
>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=17.63  E-value=26  Score=13.12  Aligned_cols=16  Identities=31%  Similarity=0.883  Sum_probs=8.8

Q ss_pred             CCEE----EEEEECCCCCCC
Q ss_conf             5214----898613478883
Q gi|254780542|r  112 SIYD----IWLMQCKDPIND  127 (210)
Q Consensus       112 PvYD----IWvl~Ck~p~~~  127 (210)
                      |+||    |.+.+|.||--|
T Consensus        14 pvy~~kgeikvfrcsnpacd   33 (36)
T d1pvma3          14 PVYNEKGEIKVFRCSNPACD   33 (36)
T ss_dssp             EEECTTSCEEEEEESCTTCC
T ss_pred             EEECCCCCEEEEECCCCCCC
T ss_conf             71157772889972797666


No 3  
>d1ei5a2 b.61.3.1 (A:418-520) D-aminopeptidase, middle and C-terminal domains {Ochrobactrum anthropi [TaxId: 529]}
Probab=13.49  E-value=33  Score=12.45  Aligned_cols=15  Identities=20%  Similarity=0.736  Sum_probs=11.0

Q ss_pred             EEEEEEECCCCCCCC
Q ss_conf             148986134788832
Q gi|254780542|r  114 YDIWLMQCKDPINDS  128 (210)
Q Consensus       114 YDIWvl~Ck~p~~~~  128 (210)
                      =|||++.|.-..+..
T Consensus        52 ~DvW~L~~~R~mDAp   66 (103)
T d1ei5a2          52 SDVWLLPVQRSMDAP   66 (103)
T ss_dssp             TTEEEEEECCCSSSS
T ss_pred             CCEEEEECCCCCCCC
T ss_conf             946998655547998


No 4  
>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.21  E-value=33  Score=12.40  Aligned_cols=23  Identities=39%  Similarity=0.628  Sum_probs=18.2

Q ss_pred             CCEEEECCCCCCCCCCCEEEEEEECCC
Q ss_conf             757520757882338521489861347
Q gi|254780542|r   97 GWMFADSPAMNAIDHSIYDIWLMQCKD  123 (210)
Q Consensus        97 GWMfASSPsLnalEHPvYDIWvl~Ck~  123 (210)
                      |=.|+-|=-+|.|+|||-|    .|+.
T Consensus        12 g~~F~DSYL~~~Fd~~vCD----~CRD   34 (36)
T d1d4ua2          12 GKEFMDSYLMDHFDLPTCD----DCRD   34 (36)
T ss_dssp             CCEESCSSSTTTTSCCCCT----TTCS
T ss_pred             CCHHHHHHHHHCCCCHHCC----CCCC
T ss_conf             7377899999738950114----3547


No 5  
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.96  E-value=29  Score=12.76  Aligned_cols=23  Identities=22%  Similarity=0.585  Sum_probs=16.8

Q ss_pred             CCCCEEECCCEEEECCCCCCCCC
Q ss_conf             76314442757520757882338
Q gi|254780542|r   89 RIVRSIFSGWMFADSPAMNAIDH  111 (210)
Q Consensus        89 ~~~~~IF~GWMfASSPsLnalEH  111 (210)
                      ..+..||.||+.-..|-.+..+.
T Consensus       148 ~~dviI~EGWcvG~~p~~~~~~~  170 (286)
T d1odfa_         148 PVDIFILEGWFLGFNPILQGIEN  170 (286)
T ss_dssp             SCSEEEEEESSTTCCCCCSCTTT
T ss_pred             CCCEEEEECHHHCCCCHHHHHHC
T ss_conf             98789970022045412445530


No 6  
>d1w2za3 d.17.2.1 (A:99-206) Copper amine oxidase, domains 1 and 2 {Pea seedling (Pisum sativum) [TaxId: 3888]}
Probab=12.61  E-value=35  Score=12.29  Aligned_cols=33  Identities=12%  Similarity=-0.039  Sum_probs=25.2

Q ss_pred             CCCCEEECCCEEEECCCCCCCCCCCEEEE-EEEC
Q ss_conf             76314442757520757882338521489-8613
Q gi|254780542|r   89 RIVRSIFSGWMFADSPAMNAIDHSIYDIW-LMQC  121 (210)
Q Consensus        89 ~~~~~IF~GWMfASSPsLnalEHPvYDIW-vl~C  121 (210)
                      .+.+.++++.||...|.-|..-||+=-+- +++.
T Consensus        50 e~~~Rl~~~~~f~r~~~~N~YA~PIeGl~~vVDl   83 (108)
T d1w2za3          50 EKNVRTVRLDCFMKESTVNIYVRPITGITIVADL   83 (108)
T ss_dssp             SCCCCEEEEEEEECTTCSCGGGSBCCSEEEEEET
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEC
T ss_conf             8896589999877569987252314850899988


No 7  
>d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.64  E-value=33  Score=12.40  Aligned_cols=18  Identities=11%  Similarity=0.159  Sum_probs=15.2

Q ss_pred             EEEEEEECCCCCCCCCCH
Q ss_conf             148986134788832000
Q gi|254780542|r  114 YDIWLMQCKDPINDSISN  131 (210)
Q Consensus       114 YDIWvl~Ck~p~~~~~~~  131 (210)
                      -|+++.||+.|+++.+-+
T Consensus       205 PDilvcRse~~l~~~~k~  222 (266)
T d1s1ma2         205 PDILICRSDRAVPANERA  222 (266)
T ss_dssp             CSEEEEEESSCCCHHHHH
T ss_pred             CCEEEECCCCCCCHHHHH
T ss_conf             875763365579988999


No 8  
>d1d6za3 d.17.2.1 (A:186-300) Copper amine oxidase, domains 1 and 2 {Escherichia coli [TaxId: 562]}
Probab=10.50  E-value=41  Score=11.86  Aligned_cols=52  Identities=10%  Similarity=0.077  Sum_probs=33.2

Q ss_pred             CCCEEECCCEEEECCCCCCCCCCCEEEE-EEECCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6314442757520757882338521489-86134788832000003440000000368842357101
Q gi|254780542|r   90 IVRSIFSGWMFADSPAMNAIDHSIYDIW-LMQCKDPINDSISNSESISKKALSEYSSTDITSQGSEK  155 (210)
Q Consensus        90 ~~~~IF~GWMfASSPsLnalEHPvYDIW-vl~Ck~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (210)
                      ....+.+++||..+|.-|..-||+=-+- ++++..              +..-+..+.++..+|.+.
T Consensus        53 ~~~Rl~~~~~f~~~~~~N~YA~PIeGl~~vvDl~~--------------~~Vi~i~D~~~vpvP~~~  105 (115)
T d1d6za3          53 QDARLLKVISYLDVGDGNYWAHPIENLVAVVDLEQ--------------KKIVKIEEGPVVPVPMTA  105 (115)
T ss_dssp             SSSCEEEEEEEECCSSSCGGGSEEEEEEEEEETTT--------------TEEEEEEECCCCCCCCSC
T ss_pred             CCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCC--------------CEEEEEECCCCCCCCCCC
T ss_conf             78538999997858999856252586189998998--------------989999778876389998


No 9  
>d1l2ha_ b.42.1.2 (A:) Interleukin-1beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.00  E-value=42  Score=11.75  Aligned_cols=13  Identities=23%  Similarity=0.355  Sum_probs=8.1

Q ss_pred             EECCCEEEECCCC
Q ss_conf             4427575207578
Q gi|254780542|r   94 IFSGWMFADSPAM  106 (210)
Q Consensus        94 IF~GWMfASSPsL  106 (210)
                      -|-||.++.|+.=
T Consensus       113 a~PgWFIsTs~~~  125 (149)
T d1l2ha_         113 QFPNFYISTSQAE  125 (149)
T ss_dssp             SSTTCBEEBCSST
T ss_pred             CCCCCEEECCCCC
T ss_conf             6899689748768


No 10 
>d1md6a_ b.42.1.2 (A:) Interleukin-1F5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.19  E-value=45  Score=11.56  Aligned_cols=14  Identities=14%  Similarity=0.638  Sum_probs=5.8

Q ss_pred             CCCCCCCCEEEEEE
Q ss_conf             88233852148986
Q gi|254780542|r  106 MNAIDHSIYDIWLM  119 (210)
Q Consensus       106 LnalEHPvYDIWvl  119 (210)
                      .+.||..-|==|-+
T Consensus       107 t~tfESaa~PgWFI  120 (154)
T d1md6a_         107 TSSFESAAYPGWFL  120 (154)
T ss_dssp             CEEEEESSSTTCEE
T ss_pred             EEEEEECCCCCCEE
T ss_conf             36898545799579


Done!