RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780542|ref|YP_003064955.1| hypothetical protein
CLIBASIA_02145 [Candidatus Liberibacter asiaticus str. psy62]
         (210 letters)



>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
           membrane, receptor, polymorphism, molecular mimicry,
           multiple sclerosis; HET: NAG BMA MAN; 3.00A {Homo
           sapiens}
          Length = 279

 Score = 27.1 bits (59), Expect = 2.7
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 158 GSSSNKTLEKESSQPLENNLSMDLKGRPIQELG 190
           G S N    ++ ++P+   +S +  GR  Q+ G
Sbjct: 243 GLSENDEWTQDRAKPVTQIVSAEAWGRSRQDRG 275


>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus,
           methyltransferase, adoMet, structural genomics; 1.80A
           {Thermus thermophilus HB8} SCOP: b.122.1.9 c.66.1.51
           PDB: 1wxw_A 2cww_A*
          Length = 382

 Score = 27.1 bits (59), Expect = 3.2
 Identities = 8/100 (8%), Positives = 27/100 (27%), Gaps = 7/100 (7%)

Query: 37  KITGRVLTFDVEINQSAQFGSLIIK----PMVCYSRDDREAQRIDAFVSISEIFTDRIVR 92
            +  R   F    +  A     + +          +D     R+    +  ++    +V 
Sbjct: 54  DLAVRAYRFAPAEDPVAALLENLAQALARREAVLRQDPEGGYRL--VHAEGDLLPGLVVD 111

Query: 93  SIFSGWMF-ADSPAMNAIDHSIYDIWLMQCKDPINDSISN 131
                 +  A + A   +   + +      +  +  + + 
Sbjct: 112 YYAGHAVVQATAHAWEGLLPQVAEALRPHVQSVLAKNDAR 151


>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
           musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
           1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
           2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 1d9k_B* 2aq3_A
           3byy_A 3byt_A 3bzd_A 1u3h_B ...
          Length = 238

 Score = 26.8 bits (58), Expect = 4.1
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 157 SGSSSNKTLEKESSQPLENNLSMDLKGR 184
            G S      + S +P+  N+S +  GR
Sbjct: 209 HGLSEEDKWPEGSPKPVTQNISAEAWGR 236


>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling
           pathway, cell membrane, cytoplasm, hydrolase, magnesium,
           manganese; HET: A8S; 1.88A {Arabidopsis thaliana} PDB:
           3jrq_A*
          Length = 316

 Score = 26.6 bits (57), Expect = 4.3
 Identities = 8/45 (17%), Positives = 17/45 (37%)

Query: 89  RIVRSIFSGWMFADSPAMNAIDHSIYDIWLMQCKDPINDSISNSE 133
           R +   +        P + A+     D  L+   D + D +++ E
Sbjct: 195 RSIGDRYLKPSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEE 239


>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
           immune system/receptor/complex, TCR, MHC,
           immunodominance, FLU, complex; 1.40A {Homo sapiens}
           SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
           2axh_A 2axj_A 2ak4_E 3he7_D* 2eyr_B 2cde_B 3huj_F*
           2po6_D* 1bd2_E 1j8h_E* 1fyt_E* 2eys_B 2eyt_B 2gj6_E*
           1ao7_E* 3d39_E* ...
          Length = 252

 Score = 26.7 bits (58), Expect = 4.3
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 158 GSSSNKTLEKESSQPLENNLSMDLKGRPIQELG 190
           G S N    ++ ++P+   +S +  GR  Q+ G
Sbjct: 216 GLSENDEWTQDRAKPVTQIVSAEAWGRADQDRG 248


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.1 bits (57), Expect = 5.9
 Identities = 31/180 (17%), Positives = 55/180 (30%), Gaps = 83/180 (46%)

Query: 62  PMVCYS-RD-DREA-QR-IDAF---------VSISEIFTDR--IVRSIFSGWMFADSPAM 106
           PM+  S  +  +E  Q  ++           V IS +   +  +V    SG      P  
Sbjct: 337 PML--SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV----SG------PPQ 384

Query: 107 NAIDHSIY--DIWL--MQCKDPINDS-ISNSE---SISKKAL-------SEYSSTDITSQ 151
                S+Y  ++ L   +    ++ S I  SE     S + L       S          
Sbjct: 385 -----SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL-------- 431

Query: 152 GSEKSSGSSSNKTLEKESSQPLE----NNLSM---DLK--------GRPIQELGNNLSDS 196
                        L   S    +    NN+S    D++        G  ++ L  ++S+ 
Sbjct: 432 -------------LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478


>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
           binding, haloacid dehydrogenease superfamily, phosphate
           analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
           PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A
          Length = 1028

 Score = 25.6 bits (55), Expect = 9.7
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 141 SEYSSTDITSQGSEKSSGSSSNKTLEKESSQPLENNLSMDLKGRPIQELGNNLS---DSG 197
            +Y     +   ++       +K  +K     L+  +SMD     + EL N        G
Sbjct: 8   DKYEPAATSENATKSKKKGKKDKIDKKRDLDELKKEVSMDDHKLSLDELHNKYGTDLTRG 67

Query: 198 LNEQD 202
           L    
Sbjct: 68  LTNAR 72


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.315    0.129    0.359 

Gapped
Lambda     K      H
   0.267   0.0391    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,593,094
Number of extensions: 65878
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 12
Length of query: 210
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 122
Effective length of database: 3,559,758
Effective search space: 434290476
Effective search space used: 434290476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.5 bits)