RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780542|ref|YP_003064955.1| hypothetical protein CLIBASIA_02145 [Candidatus Liberibacter asiaticus str. psy62] (210 letters) >2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, membrane, receptor, polymorphism, molecular mimicry, multiple sclerosis; HET: NAG BMA MAN; 3.00A {Homo sapiens} Length = 279 Score = 27.1 bits (59), Expect = 2.7 Identities = 9/33 (27%), Positives = 17/33 (51%) Query: 158 GSSSNKTLEKESSQPLENNLSMDLKGRPIQELG 190 G S N ++ ++P+ +S + GR Q+ G Sbjct: 243 GLSENDEWTQDRAKPVTQIVSAEAWGRSRQDRG 275 >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus HB8} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Length = 382 Score = 27.1 bits (59), Expect = 3.2 Identities = 8/100 (8%), Positives = 27/100 (27%), Gaps = 7/100 (7%) Query: 37 KITGRVLTFDVEINQSAQFGSLIIK----PMVCYSRDDREAQRIDAFVSISEIFTDRIVR 92 + R F + A + + +D R+ + ++ +V Sbjct: 54 DLAVRAYRFAPAEDPVAALLENLAQALARREAVLRQDPEGGYRL--VHAEGDLLPGLVVD 111 Query: 93 SIFSGWMF-ADSPAMNAIDHSIYDIWLMQCKDPINDSISN 131 + A + A + + + + + + + Sbjct: 112 YYAGHAVVQATAHAWEGLLPQVAEALRPHVQSVLAKNDAR 151 >1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 1d9k_B* 2aq3_A 3byy_A 3byt_A 3bzd_A 1u3h_B ... Length = 238 Score = 26.8 bits (58), Expect = 4.1 Identities = 8/28 (28%), Positives = 13/28 (46%) Query: 157 SGSSSNKTLEKESSQPLENNLSMDLKGR 184 G S + S +P+ N+S + GR Sbjct: 209 HGLSEEDKWPEGSPKPVTQNISAEAWGR 236 >3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membrane, cytoplasm, hydrolase, magnesium, manganese; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3jrq_A* Length = 316 Score = 26.6 bits (57), Expect = 4.3 Identities = 8/45 (17%), Positives = 17/45 (37%) Query: 89 RIVRSIFSGWMFADSPAMNAIDHSIYDIWLMQCKDPINDSISNSE 133 R + + P + A+ D L+ D + D +++ E Sbjct: 195 RSIGDRYLKPSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEE 239 >1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2axh_A 2axj_A 2ak4_E 3he7_D* 2eyr_B 2cde_B 3huj_F* 2po6_D* 1bd2_E 1j8h_E* 1fyt_E* 2eys_B 2eyt_B 2gj6_E* 1ao7_E* 3d39_E* ... Length = 252 Score = 26.7 bits (58), Expect = 4.3 Identities = 9/33 (27%), Positives = 17/33 (51%) Query: 158 GSSSNKTLEKESSQPLENNLSMDLKGRPIQELG 190 G S N ++ ++P+ +S + GR Q+ G Sbjct: 216 GLSENDEWTQDRAKPVTQIVSAEAWGRADQDRG 248 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 26.1 bits (57), Expect = 5.9 Identities = 31/180 (17%), Positives = 55/180 (30%), Gaps = 83/180 (46%) Query: 62 PMVCYS-RD-DREA-QR-IDAF---------VSISEIFTDR--IVRSIFSGWMFADSPAM 106 PM+ S + +E Q ++ V IS + + +V SG P Sbjct: 337 PML--SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV----SG------PPQ 384 Query: 107 NAIDHSIY--DIWL--MQCKDPINDS-ISNSE---SISKKAL-------SEYSSTDITSQ 151 S+Y ++ L + ++ S I SE S + L S Sbjct: 385 -----SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL-------- 431 Query: 152 GSEKSSGSSSNKTLEKESSQPLE----NNLSM---DLK--------GRPIQELGNNLSDS 196 L S + NN+S D++ G ++ L ++S+ Sbjct: 432 -------------LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478 >2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028 Score = 25.6 bits (55), Expect = 9.7 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 3/65 (4%) Query: 141 SEYSSTDITSQGSEKSSGSSSNKTLEKESSQPLENNLSMDLKGRPIQELGNNLS---DSG 197 +Y + ++ +K +K L+ +SMD + EL N G Sbjct: 8 DKYEPAATSENATKSKKKGKKDKIDKKRDLDELKKEVSMDDHKLSLDELHNKYGTDLTRG 67 Query: 198 LNEQD 202 L Sbjct: 68 LTNAR 72 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.315 0.129 0.359 Gapped Lambda K H 0.267 0.0391 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,593,094 Number of extensions: 65878 Number of successful extensions: 151 Number of sequences better than 10.0: 1 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 12 Length of query: 210 Length of database: 5,693,230 Length adjustment: 88 Effective length of query: 122 Effective length of database: 3,559,758 Effective search space: 434290476 Effective search space used: 434290476 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 54 (25.5 bits)