Query gi|254780543|ref|YP_003064956.1| NADH dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 131
No_of_seqs 109 out of 570
Neff 5.1
Searched_HMMs 13730
Date Wed Jun 1 10:12:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780543.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d3bb_ b.38.1.1 (B:) B core S 18.3 15 0.0011 15.5 0.5 20 24-43 20-39 (81)
2 d2c4ba1 d.1.1.2 (A:3-110) Barn 12.6 42 0.003 13.1 3.7 37 21-58 40-90 (108)
3 d1i4k1_ b.38.1.1 (1:) Archaeal 11.0 47 0.0034 12.8 1.7 20 24-43 25-44 (72)
4 d2fwka1 b.38.1.1 (A:24-115) U6 9.4 52 0.0038 12.6 1.1 21 24-44 27-47 (92)
5 d1mgqa_ b.38.1.1 (A:) Archaeal 9.2 55 0.004 12.4 1.7 20 24-43 28-47 (74)
6 d1h641_ b.38.1.1 (1:) Archaeal 8.2 61 0.0045 12.2 1.7 20 24-43 24-43 (71)
7 d1p6ra_ a.4.5.39 (A:) Penicill 8.1 47 0.0034 12.8 0.5 37 5-42 33-69 (82)
8 d2euca1 a.249.1.1 (A:1-113) Hy 8.1 54 0.0039 12.5 0.8 26 2-27 16-41 (113)
9 d1jmqa_ b.72.1.1 (A:) Yap65 ww 7.4 67 0.0048 12.0 1.2 18 27-44 12-29 (46)
10 d1eova1 b.40.4.1 (A:71-204) As 6.2 41 0.003 13.1 -0.6 48 32-79 2-51 (134)
No 1
>d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.27 E-value=15 Score=15.49 Aligned_cols=20 Identities=15% Similarity=-0.027 Sum_probs=16.1
Q ss_pred HHHCEEEEEECCCCEEEEEC
Q ss_conf 13070436666587865505
Q gi|254780543|r 24 WRFGHIVGKDEFGNTYYESR 43 (131)
Q Consensus 24 ~~~g~~VG~D~~GNkYye~~ 43 (131)
.+.|.|+|-|+++|---++-
T Consensus 20 ~~~G~L~~~D~~~NlvL~~~ 39 (81)
T d1d3bb_ 20 IFIGTFKAFDKHMNLILCDC 39 (81)
T ss_dssp EEEEEEEECCTTCCEEEEEE
T ss_pred EEEEEEEEECCCCCEEECCE
T ss_conf 99999999878668898587
No 2
>d2c4ba1 d.1.1.2 (A:3-110) Barnase {Bacillus amyloliquefaciens [TaxId: 1390]}
Probab=12.56 E-value=42 Score=13.10 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=22.2
Q ss_pred HHHHHHCEEEEEECCCC-----------EEEEECCCCCCC---CCEEEEECC
Q ss_conf 43313070436666587-----------865505777777---620899478
Q gi|254780543|r 21 FFTWRFGHIVGKDEFGN-----------TYYESRKNINGS---SRRWVIYNG 58 (131)
Q Consensus 21 l~t~~~g~~VG~D~~GN-----------kYye~~~~~~~~---~rRwV~Y~~ 58 (131)
|.-..-|+-+|-|.||| .|+|--.+..+. .+|.| |.+
T Consensus 40 l~~v~pgk~IGG~~F~NrE~~LP~~~~~~y~E~dV~~~g~~RGa~RIV-~g~ 90 (108)
T d2c4ba1 40 LADVAPGKSIGGDIFSNREGKLPGKSGRTWREADINYTSGFRNSDRIL-YSS 90 (108)
T ss_dssp HHHHSTTCEEEEEEECCTTCCSCCCTTCCEEEEECSCCSSSCCSCEEE-EET
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEE-ECC
T ss_conf 301388752266645468477888889838898707999988985589-889
No 3
>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]}
Probab=10.97 E-value=47 Score=12.81 Aligned_cols=20 Identities=20% Similarity=-0.049 Sum_probs=17.1
Q ss_pred HHHCEEEEEECCCCEEEEEC
Q ss_conf 13070436666587865505
Q gi|254780543|r 24 WRFGHIVGKDEFGNTYYESR 43 (131)
Q Consensus 24 ~~~g~~VG~D~~GNkYye~~ 43 (131)
.+.|.+.|-|++.|-.-++-
T Consensus 25 ~~~G~L~~~D~~mNlvL~~~ 44 (72)
T d1i4k1_ 25 EFRGTLDGYDIHMNLVLLDA 44 (72)
T ss_dssp EEEEEEEEECTTCCEEEEEE
T ss_pred EEEEEEEEECCCCCEEEEEE
T ss_conf 99999999959998599349
No 4
>d2fwka1 b.38.1.1 (A:24-115) U6 snRNA-associated sm-like protein LSM5 {Cryptosporidium parvum [TaxId: 5807]}
Probab=9.44 E-value=52 Score=12.60 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=17.2
Q ss_pred HHHCEEEEEECCCCEEEEECC
Q ss_conf 130704366665878655057
Q gi|254780543|r 24 WRFGHIVGKDEFGNTYYESRK 44 (131)
Q Consensus 24 ~~~g~~VG~D~~GNkYye~~~ 44 (131)
.+.|.+++-|++.|---++-.
T Consensus 27 ~~~G~L~~~D~~~NlvL~d~~ 47 (92)
T d2fwka1 27 EFSGVLRGFDEYVNMVLDDVQ 47 (92)
T ss_dssp EECCEEEEECTTCCEEEESCC
T ss_pred EEEEEEEEECCCCCEEEEEEE
T ss_conf 999999999589997981479
No 5
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=9.24 E-value=55 Score=12.45 Aligned_cols=20 Identities=15% Similarity=-0.120 Sum_probs=17.1
Q ss_pred HHHCEEEEEECCCCEEEEEC
Q ss_conf 13070436666587865505
Q gi|254780543|r 24 WRFGHIVGKDEFGNTYYESR 43 (131)
Q Consensus 24 ~~~g~~VG~D~~GNkYye~~ 43 (131)
.+.|+++|.|.+.|-.-++-
T Consensus 28 ~~~G~L~~~D~~mNl~L~~~ 47 (74)
T d1mgqa_ 28 EFRGVLKSFDLHMNLVLNDA 47 (74)
T ss_dssp EEEEEEEEECTTCCEEEEEE
T ss_pred EEEEEEEEECCCCCEEEEEE
T ss_conf 99999999979998599349
No 6
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=8.16 E-value=61 Score=12.20 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=16.7
Q ss_pred HHHCEEEEEECCCCEEEEEC
Q ss_conf 13070436666587865505
Q gi|254780543|r 24 WRFGHIVGKDEFGNTYYESR 43 (131)
Q Consensus 24 ~~~g~~VG~D~~GNkYye~~ 43 (131)
...|+++|-|.+.|-.-.+-
T Consensus 24 ~~~G~L~~~D~~mNlvL~~~ 43 (71)
T d1h641_ 24 EFRGRLIGYDIHLNVVLADA 43 (71)
T ss_dssp EEEEEEEEECTTCCEEEEEE
T ss_pred EEEEEEEEECCCCCEEEEEE
T ss_conf 99999999989999499259
No 7
>d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]}
Probab=8.07 E-value=47 Score=12.81 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=26.5
Q ss_pred HHHHHHCCCCCEEHHHHHHHHHCEEEEEECCCCEEEEE
Q ss_conf 78673314796610214331307043666658786550
Q gi|254780543|r 5 LLQIFTWWNGQTLGTRFFTWRFGHIVGKDEFGNTYYES 42 (131)
Q Consensus 5 l~~iftWwn~~TlgT~l~t~~~g~~VG~D~~GNkYye~ 42 (131)
|.+..- |.-.|+-|.|.-...--+|..+..|+.|+=.
T Consensus 33 l~~~~~-~~~tTv~T~L~rL~~KG~l~~~k~gr~~~Y~ 69 (82)
T d1p6ra_ 33 LSKTST-WSPKTIQTMLLRLIKKGALNHHKEGRVFVYT 69 (82)
T ss_dssp HHHHSC-CCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred HCCCCC-CCHHHHHHHHHHHHHCCCEEEEECCCEEEEE
T ss_conf 502369-7284799999999988986787059858997
No 8
>d2euca1 a.249.1.1 (A:1-113) Hypothetical protein YfmB {Bacillus subtilis [TaxId: 1423]}
Probab=8.07 E-value=54 Score=12.50 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=21.9
Q ss_pred HHHHHHHHHCCCCCEEHHHHHHHHHC
Q ss_conf 66778673314796610214331307
Q gi|254780543|r 2 KNFLLQIFTWWNGQTLGTRFFTWRFG 27 (131)
Q Consensus 2 ~~~l~~iftWwn~~TlgT~l~t~~~g 27 (131)
..+.||||-=|+++.-|++-.+.|--
T Consensus 16 SDLVKQiF~r~~~~~~~~~~l~~FAe 41 (113)
T d2euca1 16 SDLVKQIFHKRAGCSPGIHELAVFAE 41 (113)
T ss_dssp HHHHHHHHHHHBSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 99999999852799998505889899
No 9
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.43 E-value=67 Score=12.01 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=11.4
Q ss_pred CEEEEEECCCCEEEEECC
Q ss_conf 704366665878655057
Q gi|254780543|r 27 GHIVGKDEFGNTYYESRK 44 (131)
Q Consensus 27 g~~VG~D~~GNkYye~~~ 44 (131)
|--.+.|..|..||.+..
T Consensus 12 GWe~~~d~~G~~Yyinh~ 29 (46)
T d1jmqa_ 12 GWEMAKTSSGQRYFKNHI 29 (46)
T ss_dssp TBCCBCCSSCCCBEEETT
T ss_pred CCEEEECCCCCEEEEECC
T ss_conf 812788899998988899
No 10
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.20 E-value=41 Score=13.11 Aligned_cols=48 Identities=13% Similarity=0.311 Sum_probs=21.5
Q ss_pred EECCCCEEEEECCCCCCCCCEEEEECCCCCCCCC--CCCCCCEEECCCCC
Q ss_conf 6665878655057777776208994786675536--86532003214168
Q gi|254780543|r 32 KDEFGNTYYESRKNINGSSRRWVIYNGYTDPSSI--PPMWHGWIHHRRIG 79 (131)
Q Consensus 32 ~D~~GNkYye~~~~~~~~~rRwV~Y~~~~d~s~I--ppeWh~WLh~~~d~ 79 (131)
+|.+|+-.+............+..+.+..++..+ ...=+||+|..|+.
T Consensus 2 ~~~yG~lp~~~s~~~~~~~~~r~~i~dl~~~~~~g~~V~v~GwV~~~R~~ 51 (134)
T d1eova1 2 KDNYGKLPLIQSRDSDRTGQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQ 51 (134)
T ss_dssp CSSEEECCCCCCCGGGCCCCCCCCGGGCCTTTTTTCEEEEEEEEEEEEEC
T ss_pred HHHCCCCCCCCCCCCCCCCCEEEEECCCCCHHCCCCEEEEEEEEEEEEEC
T ss_conf 23508871001345666782799961656511089899999999999837
Done!