RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780543|ref|YP_003064956.1| NADH dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (131 letters) >d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium butyricum [TaxId: 1492]} Length = 786 Score = 26.3 bits (58), Expect = 0.87 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 5/60 (8%) Query: 2 KNFLLQIFTWWNGQTLGTRFFT-----WRFGHIVGKDEFGNTYYESRKNINGSSRRWVIY 56 K L +F +WNG+T + R GN YY +++ + + Sbjct: 115 KEKLKDVFEYWNGKTTSELATSYMTEETREAVNCDVFTVGNYYYNGVGHVSVDYGKVLRV 174 >d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Length = 880 Score = 26.2 bits (57), Expect = 0.95 Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 1/87 (1%) Query: 5 LLQIFTWWNGQTLGTRFFTWRFGHIVGKDEFGNTYYESRKNINGSSR-RWVIYNGYTDPS 63 L + G L F RF +G D GN + + RW + + Sbjct: 221 LNEQLEENLGYKLPVEFVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDI 280 Query: 64 SIPPMWHGWIHHRRIGVPKAEEENSFD 90 + + + EE + + Sbjct: 281 QVLVSELSMVEATPELLALVGEEGAAE 307 >d1czan2 c.55.1.3 (N:223-465) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 243 Score = 24.9 bits (54), Expect = 2.6 Identities = 7/28 (25%), Positives = 12/28 (42%) Query: 85 EENSFDWQKPHCVNATGSLNSYYPRFRR 112 +N + V GSL +P++ R Sbjct: 176 RDNKGTPRLRTTVGVDGSLYKTHPQYSR 203 >d1es5a_ e.3.1.1 (A:) D-ala carboxypeptidase/transpeptidase {Streptomyces sp., K15 [TaxId: 1931]} Length = 260 Score = 24.4 bits (52), Expect = 3.4 Identities = 6/57 (10%), Positives = 18/57 (31%) Query: 7 QIFTWWNGQTLGTRFFTWRFGHIVGKDEFGNTYYESRKNINGSSRRWVIYNGYTDPS 63 + + T+ +T + G +T+ + ++ S + G + Sbjct: 162 AMKNSTFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGAGPEA 218 >d1v4sa2 c.55.1.3 (A:219-461) Glucokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 243 Score = 24.1 bits (52), Expect = 4.3 Identities = 5/20 (25%), Positives = 8/20 (40%) Query: 93 KPHCVNATGSLNSYYPRFRR 112 V GS+ +P F+ Sbjct: 184 MRITVGVDGSVYKLHPSFKE 203 >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Score = 24.2 bits (52), Expect = 4.4 Identities = 8/30 (26%), Positives = 15/30 (50%) Query: 72 WIHHRRIGVPKAEEENSFDWQKPHCVNATG 101 W H + + + A E+ ++ P C N +G Sbjct: 31 WFHGKCVKITPARAEHIKQYKCPSCSNKSG 60 >d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052 {Agrobacterium tumefaciens [TaxId: 358]} Length = 200 Score = 23.7 bits (51), Expect = 5.8 Identities = 8/12 (66%), Positives = 8/12 (66%) Query: 12 WNGQTLGTRFFT 23 WNGQT G FT Sbjct: 39 WNGQTRGDHAFT 50 >d1czan4 c.55.1.3 (N:671-913) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 243 Score = 23.3 bits (50), Expect = 6.6 Identities = 8/28 (28%), Positives = 11/28 (39%) Query: 85 EENSFDWQKPHCVNATGSLNSYYPRFRR 112 EN + V G+L +P F R Sbjct: 176 RENRGLDRLNVTVGVDGTLYKLHPHFSR 203 >d1n7oa1 a.102.3.2 (A:170-540) Hyaluronate lyase {Streptococcus pneumoniae [TaxId: 1313]} Length = 371 Score = 23.3 bits (50), Expect = 7.0 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 8/51 (15%) Query: 36 GNTYYES---RKNINGSSRRWVIYNGYTDPSSIPPMWHGWIHHRRIGVPKA 83 + YY+ + + S W+ + Y + W IG P+A Sbjct: 87 SSRYYQDETVVRTVR-DSMEWMHKHVYNSE---KSIVGNW-WDYEIGTPRA 132 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.320 0.137 0.481 Gapped Lambda K H 0.267 0.0534 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 608,596 Number of extensions: 27636 Number of successful extensions: 98 Number of sequences better than 10.0: 1 Number of HSP's gapped: 98 Number of HSP's successfully gapped: 24 Length of query: 131 Length of database: 2,407,596 Length adjustment: 76 Effective length of query: 55 Effective length of database: 1,364,116 Effective search space: 75026380 Effective search space used: 75026380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (22.7 bits)