RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780543|ref|YP_003064956.1| NADH dehydrogenase [Candidatus
Liberibacter asiaticus str. psy62]
         (131 letters)



>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
           butyricum [TaxId: 1492]}
          Length = 786

 Score = 26.3 bits (58), Expect = 0.87
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 2   KNFLLQIFTWWNGQTLGTRFFT-----WRFGHIVGKDEFGNTYYESRKNINGSSRRWVIY 56
           K  L  +F +WNG+T      +      R          GN YY    +++    + +  
Sbjct: 115 KEKLKDVFEYWNGKTTSELATSYMTEETREAVNCDVFTVGNYYYNGVGHVSVDYGKVLRV 174


>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia
           coli [TaxId: 562]}
          Length = 880

 Score = 26.2 bits (57), Expect = 0.95
 Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 1/87 (1%)

Query: 5   LLQIFTWWNGQTLGTRFFTWRFGHIVGKDEFGNTYYESRKNINGSSR-RWVIYNGYTDPS 63
           L +      G  L   F   RF   +G D  GN    +    +     RW   + +    
Sbjct: 221 LNEQLEENLGYKLPVEFVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDI 280

Query: 64  SIPPMWHGWIHHRRIGVPKAEEENSFD 90
            +       +      +    EE + +
Sbjct: 281 QVLVSELSMVEATPELLALVGEEGAAE 307


>d1czan2 c.55.1.3 (N:223-465) Mammalian type I hexokinase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 243

 Score = 24.9 bits (54), Expect = 2.6
 Identities = 7/28 (25%), Positives = 12/28 (42%)

Query: 85  EENSFDWQKPHCVNATGSLNSYYPRFRR 112
            +N    +    V   GSL   +P++ R
Sbjct: 176 RDNKGTPRLRTTVGVDGSLYKTHPQYSR 203


>d1es5a_ e.3.1.1 (A:) D-ala carboxypeptidase/transpeptidase
           {Streptomyces sp., K15 [TaxId: 1931]}
          Length = 260

 Score = 24.4 bits (52), Expect = 3.4
 Identities = 6/57 (10%), Positives = 18/57 (31%)

Query: 7   QIFTWWNGQTLGTRFFTWRFGHIVGKDEFGNTYYESRKNINGSSRRWVIYNGYTDPS 63
            +        + T+ +T +     G     +T+  +   ++  S    +  G    +
Sbjct: 162 AMKNSTFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGAGPEA 218


>d1v4sa2 c.55.1.3 (A:219-461) Glucokinase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 243

 Score = 24.1 bits (52), Expect = 4.3
 Identities = 5/20 (25%), Positives = 8/20 (40%)

Query: 93  KPHCVNATGSLNSYYPRFRR 112
               V   GS+   +P F+ 
Sbjct: 184 MRITVGVDGSVYKLHPSFKE 203


>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 64

 Score = 24.2 bits (52), Expect = 4.4
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 72  WIHHRRIGVPKAEEENSFDWQKPHCVNATG 101
           W H + + +  A  E+   ++ P C N +G
Sbjct: 31  WFHGKCVKITPARAEHIKQYKCPSCSNKSG 60


>d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 200

 Score = 23.7 bits (51), Expect = 5.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)

Query: 12 WNGQTLGTRFFT 23
          WNGQT G   FT
Sbjct: 39 WNGQTRGDHAFT 50


>d1czan4 c.55.1.3 (N:671-913) Mammalian type I hexokinase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 243

 Score = 23.3 bits (50), Expect = 6.6
 Identities = 8/28 (28%), Positives = 11/28 (39%)

Query: 85  EENSFDWQKPHCVNATGSLNSYYPRFRR 112
            EN    +    V   G+L   +P F R
Sbjct: 176 RENRGLDRLNVTVGVDGTLYKLHPHFSR 203


>d1n7oa1 a.102.3.2 (A:170-540) Hyaluronate lyase {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 371

 Score = 23.3 bits (50), Expect = 7.0
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 8/51 (15%)

Query: 36  GNTYYES---RKNINGSSRRWVIYNGYTDPSSIPPMWHGWIHHRRIGVPKA 83
            + YY+     + +   S  W+  + Y        +   W     IG P+A
Sbjct: 87  SSRYYQDETVVRTVR-DSMEWMHKHVYNSE---KSIVGNW-WDYEIGTPRA 132


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.481 

Gapped
Lambda     K      H
   0.267   0.0534    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 608,596
Number of extensions: 27636
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 24
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.7 bits)